Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AXA56_RS05130 Genome accession   NZ_CP031609
Coordinates   1074487..1075155 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain N3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1069487..1080155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXA56_RS05095 (AXA56_05095) yicC 1069506..1070369 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  AXA56_RS05105 (AXA56_05105) rph 1070496..1071212 (+) 717 WP_001247093.1 ribonuclease PH -
  AXA56_RS05110 (AXA56_05110) pyrE 1071278..1071919 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  AXA56_RS05115 (AXA56_05115) slmA 1071956..1072552 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  AXA56_RS05120 (AXA56_05120) dut 1072659..1073117 (-) 459 WP_000976070.1 dUTP diphosphatase -
  AXA56_RS05125 (AXA56_05125) coaBC 1073095..1074315 (-) 1221 WP_042003426.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AXA56_RS05130 (AXA56_05130) radC 1074487..1075155 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  AXA56_RS05135 (AXA56_05135) rpmB 1075372..1075608 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  AXA56_RS05140 (AXA56_05140) rpmG 1075629..1075796 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  AXA56_RS05145 (AXA56_05145) mutM 1075894..1076703 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AXA56_RS05150 (AXA56_05150) coaD 1076742..1077221 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  AXA56_RS05155 (AXA56_05155) waaA 1077229..1078506 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AXA56_RS05160 (AXA56_05160) rfaQ 1078912..1079982 (+) 1071 WP_072019113.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=266439 AXA56_RS05130 WP_001297375.1 1074487..1075155(+) (radC) [Escherichia coli strain N3]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=266439 AXA56_RS05130 WP_001297375.1 1074487..1075155(+) (radC) [Escherichia coli strain N3]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATCGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
CACCGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496