Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DY328_RS00035 Genome accession   NZ_CP031556
Coordinates   6549..6989 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain Sag27     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1549..11989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DY328_RS00020 (DY328_00020) - 2206..2832 (-) 627 WP_000449644.1 GTP pyrophosphokinase -
  DY328_RS00025 (DY328_00025) rcrQ 2940..4694 (-) 1755 WP_000851087.1 ABC transporter ATP-binding protein Regulator
  DY328_RS00030 (DY328_00030) - 4684..6502 (-) 1819 Protein_5 ABC transporter ATP-binding protein -
  DY328_RS00035 (DY328_00035) rcrR 6549..6989 (-) 441 WP_000431168.1 MarR family transcriptional regulator Regulator
  DY328_RS00040 (DY328_00040) - 7258..9330 (+) 2073 WP_000726930.1 bifunctional metallophosphatase/5'-nucleotidase -
  DY328_RS00045 (DY328_00045) - 9367..9777 (-) 411 WP_000594935.1 peptide deformylase -
  DY328_RS00050 (DY328_00050) gdhA 9847..11196 (-) 1350 WP_000200435.1 NADP-specific glutamate dehydrogenase -
  DY328_RS00055 (DY328_00055) - 11364..11873 (+) 510 WP_000870956.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=266315 DY328_RS00035 WP_000431168.1 6549..6989(-) (rcrR) [Streptococcus agalactiae strain Sag27]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=266315 DY328_RS00035 WP_000431168.1 6549..6989(-) (rcrR) [Streptococcus agalactiae strain Sag27]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATTTCTAAGTCTGTAGCGTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411