Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DS732_RS22255 Genome accession   NZ_CP031546
Coordinates   4313162..4313638 (+) Length   158 a.a.
NCBI ID   WP_001297237.1    Uniprot ID   -
Organism   Escherichia coli strain cq9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4308162..4318638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS732_RS22215 (DS732_22215) tnpB 4308438..4308785 (+) 348 WP_000624618.1 IS66 family insertion sequence element accessory protein TnpB -
  DS732_RS22220 (DS732_22220) - 4308805..4310376 (+) 1572 WP_000381443.1 IS66 family transposase -
  DS732_RS22225 (DS732_22225) - 4310495..4311172 (+) 678 WP_001097305.1 hypothetical protein -
  DS732_RS22230 (DS732_22230) - 4311178..4311411 (+) 234 WP_001278287.1 DUF905 family protein -
  DS732_RS22240 (DS732_22240) - 4311510..4312328 (+) 819 WP_116794640.1 DUF932 domain-containing protein -
  DS732_RS22245 (DS732_22245) - 4312328..4312573 (+) 246 WP_032082791.1 hypothetical protein -
  DS732_RS22250 (DS732_22250) - 4312667..4313146 (+) 480 WP_032082790.1 antirestriction protein -
  DS732_RS22255 (DS732_22255) radC 4313162..4313638 (+) 477 WP_001297237.1 RadC family protein Machinery gene
  DS732_RS22260 (DS732_22260) - 4313701..4313922 (+) 222 WP_063102745.1 DUF987 domain-containing protein -
  DS732_RS22265 (DS732_22265) - 4313941..4314585 (+) 645 WP_001774605.1 hypothetical protein -
  DS732_RS22270 (DS732_22270) cbeA 4314635..4315003 (+) 369 WP_001774606.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DS732_RS22275 (DS732_22275) - 4315093..4315467 (+) 375 WP_032082789.1 TA system toxin CbtA family protein -
  DS732_RS22280 (DS732_22280) - 4315464..4315952 (+) 489 WP_032082788.1 DUF5983 family protein -
  DS732_RS22285 (DS732_22285) - 4315969..4316166 (+) 198 WP_032082787.1 DUF957 domain-containing protein -
  DS732_RS22290 (DS732_22290) - 4316263..4317108 (+) 846 WP_032082786.1 DUF4942 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17691.29 Da        Isoelectric Point: 7.2020

>NTDB_id=266296 DS732_RS22255 WP_001297237.1 4313162..4313638(+) (radC) [Escherichia coli strain cq9]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLTHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=266296 DS732_RS22255 WP_001297237.1 4313162..4313638(+) (radC) [Escherichia coli strain cq9]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGACACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392