Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DS732_RS20020 Genome accession   NZ_CP031546
Coordinates   3894489..3894965 (+) Length   158 a.a.
NCBI ID   WP_071045793.1    Uniprot ID   -
Organism   Escherichia coli strain cq9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3889489..3899965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS732_RS19995 (DS732_19995) - 3889838..3892684 (+) 2847 WP_072644254.1 Ag43/Cah family autotransporter adhesin -
  DS732_RS20000 (DS732_20000) - 3892756..3892989 (+) 234 WP_064986988.1 DUF905 family protein -
  DS732_RS20010 (DS732_20010) - 3893079..3893897 (+) 819 WP_072644256.1 DUF932 domain-containing protein -
  DS732_RS20015 (DS732_20015) - 3893988..3894473 (+) 486 WP_072815258.1 antirestriction protein -
  DS732_RS20020 (DS732_20020) radC 3894489..3894965 (+) 477 WP_071045793.1 RadC family protein Machinery gene
  DS732_RS20025 (DS732_20025) - 3895034..3895255 (+) 222 WP_000692353.1 DUF987 domain-containing protein -
  DS732_RS20030 (DS732_20030) - 3895334..3895708 (+) 375 WP_072648994.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DS732_RS20035 (DS732_20035) - 3895754..3896131 (+) 378 WP_072644276.1 TA system toxin CbtA family protein -
  DS732_RS20040 (DS732_20040) - 3896128..3896295 (+) 168 Protein_3685 DUF5983 family protein -
  DS732_RS20045 (DS732_20045) - 3896353..3896550 (+) 198 WP_094770706.1 DUF957 domain-containing protein -
  DS732_RS20050 (DS732_20050) - 3896647..3897492 (+) 846 WP_001280435.1 DUF4942 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17689.32 Da        Isoelectric Point: 7.2020

>NTDB_id=266288 DS732_RS20020 WP_071045793.1 3894489..3894965(+) (radC) [Escherichia coli strain cq9]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=266288 DS732_RS20020 WP_071045793.1 3894489..3894965(+) (radC) [Escherichia coli strain cq9]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCAGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCCGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

56.637

71.519

0.405