Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DS732_RS15990 Genome accession   NZ_CP031546
Coordinates   3100143..3100619 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain cq9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3095143..3105619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS732_RS15960 (DS732_15960) - 3095289..3097805 (+) 2517 WP_001348608.1 hypothetical protein -
  DS732_RS15965 (DS732_15965) - 3097881..3098336 (+) 456 WP_000581504.1 IrmA family protein -
  DS732_RS15970 (DS732_15970) - 3098415..3098648 (+) 234 WP_001119729.1 DUF905 family protein -
  DS732_RS15980 (DS732_15980) - 3098748..3099566 (+) 819 WP_001234629.1 DUF932 domain-containing protein -
  DS732_RS15985 (DS732_15985) - 3099648..3100127 (+) 480 WP_000860087.1 antirestriction protein -
  DS732_RS15990 (DS732_15990) radC 3100143..3100619 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  DS732_RS15995 (DS732_15995) yeeT 3100682..3100903 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  DS732_RS16000 (DS732_16000) - 3101040..3101345 (+) 306 WP_044863316.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DS732_RS16005 (DS732_16005) cbtA 3101434..3101808 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DS732_RS16010 (DS732_16010) yeeW 3101805..3101999 (+) 195 WP_000988600.1 DUF5983 family protein -
  DS732_RS16015 (DS732_16015) - 3102045..3102125 (+) 81 Protein_2943 hypothetical protein -
  DS732_RS16020 (DS732_16020) - 3102414..3102542 (-) 129 Protein_2944 transposase domain-containing protein -
  DS732_RS16025 (DS732_16025) - 3102614..3102796 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DS732_RS16030 (DS732_16030) tmaR 3102897..3103226 (-) 330 WP_000450409.1 DUF496 family protein -
  DS732_RS16035 (DS732_16035) yeeA 3103398..3104456 (-) 1059 WP_001200891.1 FUSC family protein -
  DS732_RS16040 (DS732_16040) sbmC 3104654..3105127 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=266277 DS732_RS15990 WP_001186726.1 3100143..3100619(+) (radC) [Escherichia coli strain cq9]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=266277 DS732_RS15990 WP_001186726.1 3100143..3100619(+) (radC) [Escherichia coli strain cq9]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment