Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DS732_RS04655 Genome accession   NZ_CP031546
Coordinates   906595..907092 (+) Length   165 a.a.
NCBI ID   WP_052921247.1    Uniprot ID   -
Organism   Escherichia coli strain cq9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 901595..912092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS732_RS04635 (DS732_04635) - 902467..903234 (+) 768 WP_052921251.1 hypothetical protein -
  DS732_RS04640 (DS732_04640) - 903333..904286 (+) 954 WP_052921250.1 DUF3150 domain-containing protein -
  DS732_RS04645 (DS732_04645) - 904348..904788 (+) 441 WP_052921249.1 hypothetical protein -
  DS732_RS04650 (DS732_04650) - 904858..906513 (+) 1656 WP_052921248.1 VWA domain-containing protein -
  DS732_RS04655 (DS732_04655) radC 906595..907092 (+) 498 WP_052921247.1 DNA repair protein RadC Machinery gene
  DS732_RS04660 (DS732_04660) - 907092..907433 (+) 342 WP_002156791.1 hypothetical protein -
  DS732_RS04665 (DS732_04665) - 907524..908591 (+) 1068 WP_052921246.1 primase-helicase zinc-binding domain-containing protein -
  DS732_RS04670 (DS732_04670) - 908680..909387 (+) 708 WP_052921245.1 hypothetical protein -
  DS732_RS04675 (DS732_04675) - 909750..910814 (+) 1065 WP_052921244.1 hypothetical protein -
  DS732_RS04680 (DS732_04680) - 911018..911962 (+) 945 WP_052921243.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18606.27 Da        Isoelectric Point: 6.6094

>NTDB_id=266249 DS732_RS04655 WP_052921247.1 906595..907092(+) (radC) [Escherichia coli strain cq9]
MKNRKFFAGEEAGTYIVPEQVTEADILDMALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLDTKHRVIRF
EELFKGTLDAASVYPREVTKRALELNAAAVILVHNHPSGDPEPSEADKRITHRLRDALSLVDIRTLDHVVVASEGCVSLT
ERGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=266249 DS732_RS04655 WP_052921247.1 906595..907092(+) (radC) [Escherichia coli strain cq9]
ATGAAAAACAGAAAGTTCTTTGCTGGCGAAGAAGCCGGTACTTATATCGTTCCTGAGCAAGTGACCGAAGCGGATATCTT
AGATATGGCGCTTAAGCTTGCCCGTGGTCGATTGAGTAAAGGTCGCAAAATTGAACAGCCATCGTCGGCGTTCTCATACC
TGCAAACACTGATGCACGAGTATGAGCACGAAGTCTTTGGCGTGCTGTTTCTTGATACAAAGCATCGCGTTATTCGATTT
GAAGAGCTGTTCAAAGGCACTTTAGATGCGGCGAGCGTGTATCCAAGGGAAGTAACAAAGCGTGCGCTAGAGCTTAATGC
GGCAGCAGTGATACTGGTTCATAACCATCCATCGGGTGATCCTGAACCCAGTGAAGCTGATAAACGCATCACTCATCGAC
TCCGTGACGCCTTGTCACTTGTTGATATTCGAACGCTTGACCATGTCGTGGTCGCATCCGAGGGCTGCGTTTCGCTTACC
GAACGCGGTTATCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.18

73.939

0.364

Multiple sequence alignment