Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MC58_RS10245 Genome accession   NZ_CP026052
Coordinates   1933944..1934549 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain FDAARGOS_70     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1928944..1939549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MC58_RS10230 (MC58_010235) helD 1929161..1931215 (-) 2055 WP_000420505.1 DNA helicase IV -
  MC58_RS10235 (MC58_010240) - 1931339..1931785 (+) 447 WP_001261222.1 YccF domain-containing protein -
  MC58_RS10240 (MC58_010245) yccS 1931804..1933957 (+) 2154 WP_000950876.1 YccS family putative transporter -
  MC58_RS10245 (MC58_010250) sxy/tfoX 1933944..1934549 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  MC58_RS10250 (MC58_010255) sulA 1934766..1935275 (+) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  MC58_RS10255 (MC58_010260) ompA 1935632..1936684 (+) 1053 WP_001674965.1 porin OmpA -
  MC58_RS10260 (MC58_010265) matP 1936756..1937208 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  MC58_RS10265 (MC58_010270) - 1937394..1939154 (+) 1761 WP_000156448.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=266143 MC58_RS10245 WP_001202375.1 1933944..1934549(-) (sxy/tfoX) [Salmonella enterica strain FDAARGOS_70]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=266143 MC58_RS10245 WP_001202375.1 1933944..1934549(-) (sxy/tfoX) [Salmonella enterica strain FDAARGOS_70]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment