Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   DXG80_RS12405 Genome accession   NZ_CP031500
Coordinates   2395835..2396212 (-) Length   125 a.a.
NCBI ID   WP_010887191.1    Uniprot ID   Q9RWW9
Organism   Deinococcus radiodurans strain R1 dM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2390835..2401212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXG80_RS12375 (DXG80_12400) - 2390921..2392240 (-) 1320 WP_162177565.1 hypothetical protein -
  DXG80_RS12380 (DXG80_12405) - 2392451..2393245 (-) 795 WP_034349478.1 DUF72 domain-containing protein -
  DXG80_RS12385 (DXG80_12410) - 2393270..2393947 (-) 678 WP_010887187.1 glycerophosphodiester phosphodiesterase -
  DXG80_RS12390 (DXG80_12415) - 2394052..2394735 (+) 684 WP_010887188.1 SDR family oxidoreductase -
  DXG80_RS12395 (DXG80_12420) - 2394812..2395579 (+) 768 WP_010887189.1 sulfite exporter TauE/SafE family protein -
  DXG80_RS12400 (DXG80_12425) - 2395576..2395851 (+) 276 WP_027479532.1 hypothetical protein -
  DXG80_RS12405 (DXG80_12430) pilV 2395835..2396212 (-) 378 WP_010887191.1 type IV pilin protein Machinery gene
  DXG80_RS12410 (DXG80_12435) - 2396579..2397763 (+) 1185 WP_162177563.1 HTTM domain-containing protein -
  DXG80_RS12415 (DXG80_12440) pilV 2397806..2398282 (-) 477 WP_034349477.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DXG80_RS12420 (DXG80_12445) - 2398426..2399238 (-) 813 WP_010884088.1 IS5-like element ISDra5 family transposase -
  DXG80_RS12430 (DXG80_12455) dnaB 2399625..2400971 (+) 1347 WP_010887194.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13107.95 Da        Isoelectric Point: 5.7683

>NTDB_id=266030 DXG80_RS12405 WP_010887191.1 2395835..2396212(-) (pilV) [Deinococcus radiodurans strain R1 dM1]
MQKATEAFTLIELLVVMTIIAILISVLVPSLAGARSKAYDSATTSYLRHCASALEISRDDLGVLPSPPPTSCEDPALGVN
AQSKPASVKQSQVTVTSSGTAYTISALSQSGKTFTYDQGGFREIP

Nucleotide


Download         Length: 378 bp        

>NTDB_id=266030 DXG80_RS12405 WP_010887191.1 2395835..2396212(-) (pilV) [Deinococcus radiodurans strain R1 dM1]
ATGCAAAAGGCCACTGAGGCATTCACACTGATCGAGCTTCTCGTAGTGATGACGATAATCGCCATTCTCATCTCTGTGCT
TGTACCTAGCCTCGCGGGCGCCAGAAGTAAAGCTTATGACAGCGCCACGACATCCTACCTTCGCCATTGCGCCTCAGCGC
TTGAAATCTCACGAGACGATCTAGGAGTTTTGCCAAGTCCCCCACCAACCAGTTGTGAGGATCCAGCACTGGGTGTCAAT
GCGCAGAGCAAGCCGGCATCGGTCAAACAATCACAAGTTACGGTTACCAGCAGTGGCACTGCTTATACCATTAGTGCTCT
TTCACAAAGTGGCAAGACCTTTACCTACGATCAGGGTGGCTTTAGAGAAATCCCTTGA

Domains

Predicted by InterProScan.

Pilin A4 (PilA4)

(40-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RWW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.857

95.2

0.408