Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DXG80_RS08275 Genome accession   NZ_CP031500
Coordinates   1584268..1584735 (-) Length   155 a.a.
NCBI ID   WP_027480069.1    Uniprot ID   -
Organism   Deinococcus radiodurans strain R1 dM1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579268..1589735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXG80_RS08250 (DXG80_08260) - 1580079..1580948 (-) 870 WP_162177714.1 hypothetical protein -
  DXG80_RS08255 (DXG80_08265) paaD 1581047..1581553 (-) 507 WP_051618854.1 1,2-phenylacetyl-CoA epoxidase subunit PaaD -
  DXG80_RS08260 (DXG80_08270) paaC 1581553..1582344 (-) 792 WP_010889010.1 1,2-phenylacetyl-CoA epoxidase subunit PaaC -
  DXG80_RS08265 (DXG80_08275) - 1582341..1583003 (-) 663 WP_051618855.1 phenylacetic acid degradation protein -
  DXG80_RS08270 (DXG80_08280) paaA 1583141..1584118 (-) 978 WP_010889012.1 1,2-phenylacetyl-CoA epoxidase subunit PaaA -
  DXG80_RS08275 (DXG80_08285) luxS 1584268..1584735 (-) 468 WP_027480069.1 S-ribosylhomocysteine lyase Regulator
  DXG80_RS08280 (DXG80_08290) lspA 1584792..1585319 (+) 528 WP_231885330.1 signal peptidase II -
  DXG80_RS16720 - 1585396..1585665 (-) 270 WP_027480068.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  DXG80_RS08290 (DXG80_08300) thrB 1586064..1586987 (+) 924 WP_010889016.1 homoserine kinase -
  DXG80_RS08295 (DXG80_08305) - 1587038..1588249 (-) 1212 WP_010889017.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17051.35 Da        Isoelectric Point: 5.2233

>NTDB_id=266022 DXG80_RS08275 WP_027480069.1 1584268..1584735(-) (luxS) [Deinococcus radiodurans strain R1 dM1]
MANVESFDLDHTKVKAPYVRLAGVKTTPKGDQISKYDLRFLQPNQGAIDPAAIHTLEHLLAGYMRDHLEGVVDVSPMGCR
TGMYMAVIGEPDEQGVMKAFEAALKDTAGHDQPIPGVSELECGNYRDHDLAAARQHARDVLDQGLKVQETILLER

Nucleotide


Download         Length: 468 bp        

>NTDB_id=266022 DXG80_RS08275 WP_027480069.1 1584268..1584735(-) (luxS) [Deinococcus radiodurans strain R1 dM1]
ATGGCAAACGTCGAATCGTTCGATCTGGACCACACCAAGGTCAAGGCTCCCTATGTCCGCCTCGCCGGGGTCAAGACCAC
CCCGAAGGGTGACCAGATCTCCAAGTACGACCTGCGCTTCTTGCAGCCCAACCAGGGCGCCATCGACCCCGCCGCCATTC
ACACGCTCGAGCACCTGCTGGCGGGCTACATGCGCGACCACCTCGAGGGCGTGGTGGACGTGTCCCCGATGGGCTGCCGC
ACCGGCATGTACATGGCCGTCATCGGTGAACCCGACGAGCAGGGCGTGATGAAAGCCTTCGAGGCGGCCCTCAAGGACAC
CGCCGGGCACGACCAACCCATTCCCGGCGTGAGCGAACTCGAATGCGGCAACTACCGCGACCACGACCTCGCCGCCGCCC
GCCAGCACGCCCGCGACGTGCTCGACCAGGGGCTGAAAGTTCAGGAAACCATTCTGCTCGAACGCTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

45.455

99.355

0.452