Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   RK51_RS20355 Genome accession   NZ_CP026042
Coordinates   709845..711026 (+) Length   393 a.a.
NCBI ID   WP_005498606.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_51     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 704845..716026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK51_RS20340 (RK51_020335) - 705118..707340 (+) 2223 WP_021448064.1 M9 family metallopeptidase -
  RK51_RS20345 (RK51_020340) - 707520..708257 (+) 738 WP_005454086.1 EAL domain-containing protein -
  RK51_RS20350 (RK51_020345) ylqF 708547..709491 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  RK51_RS20355 (RK51_020350) cqsA 709845..711026 (+) 1182 WP_005498606.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  RK51_RS20360 (RK51_020355) cqsS 711104..713152 (-) 2049 WP_005498604.1 response regulator Regulator
  RK51_RS20365 (RK51_020360) - 713472..714089 (+) 618 WP_005498603.1 HAD family phosphatase -
  RK51_RS20370 (RK51_020365) - 714176..714724 (-) 549 WP_005481267.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43752.07 Da        Isoelectric Point: 6.6121

>NTDB_id=265994 RK51_RS20355 WP_005498606.1 709845..711026(+) (cqsA) [Vibrio parahaemolyticus strain FDAARGOS_51]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKGLAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=265994 RK51_RS20355 WP_005498606.1 709845..711026(+) (cqsA) [Vibrio parahaemolyticus strain FDAARGOS_51]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGTACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGGACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment