Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   RK51_RS12660 Genome accession   NZ_CP026041
Coordinates   2450079..2451500 (+) Length   473 a.a.
NCBI ID   WP_005495501.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_51     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2445079..2456500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK51_RS12640 (RK51_012635) - 2445139..2445891 (-) 753 WP_031777310.1 adenosylcobinamide-GDP ribazoletransferase -
  RK51_RS12645 (RK51_012640) cobT 2445936..2446979 (-) 1044 WP_005495498.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  RK51_RS12650 (RK51_012645) - 2447662..2448357 (+) 696 WP_005495499.1 NAD(P)H-binding protein -
  RK51_RS12655 (RK51_012650) - 2448550..2449923 (+) 1374 WP_005495500.1 L-cystine transporter -
  RK51_RS12660 (RK51_012655) sbcB 2450079..2451500 (+) 1422 WP_005495501.1 exodeoxyribonuclease I Machinery gene
  RK51_RS12665 (RK51_012660) - 2451556..2451930 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  RK51_RS12670 (RK51_012665) - 2451932..2452609 (+) 678 WP_005495502.1 LrgB family protein -
  RK51_RS12675 (RK51_012670) cdd 2452974..2453861 (+) 888 WP_005495503.1 cytidine deaminase -
  RK51_RS12680 (RK51_012675) purT 2454009..2455184 (+) 1176 WP_005495504.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  RK51_RS12685 (RK51_012680) - 2455286..2455936 (-) 651 WP_005495505.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54620.96 Da        Isoelectric Point: 4.9244

>NTDB_id=265982 RK51_RS12660 WP_005495501.1 2450079..2451500(+) (sbcB) [Vibrio parahaemolyticus strain FDAARGOS_51]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIQAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGIEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=265982 RK51_RS12660 WP_005495501.1 2450079..2451500(+) (sbcB) [Vibrio parahaemolyticus strain FDAARGOS_51]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCAAGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCATAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCTAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment