Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | RK51_RS05840 | Genome accession | NZ_CP026041 |
| Coordinates | 1118149..1119018 (-) | Length | 289 a.a. |
| NCBI ID | WP_005493974.1 | Uniprot ID | A0A249W3M2 |
| Organism | Vibrio parahaemolyticus strain FDAARGOS_51 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1113149..1124018
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RK51_RS05805 (RK51_005805) | rpsP | 1114110..1114358 (+) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
| RK51_RS05810 (RK51_005810) | rimM | 1114387..1114935 (+) | 549 | WP_005462552.1 | ribosome maturation factor RimM | - |
| RK51_RS05815 (RK51_005815) | trmD | 1114963..1115706 (+) | 744 | WP_005462562.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| RK51_RS05820 (RK51_005820) | rplS | 1115748..1116101 (+) | 354 | WP_005462554.1 | 50S ribosomal protein L19 | - |
| RK51_RS05825 (RK51_005825) | yacG | 1116503..1116697 (-) | 195 | WP_005462546.1 | DNA gyrase inhibitor YacG | - |
| RK51_RS05830 (RK51_005830) | zapD | 1116766..1117506 (-) | 741 | WP_005480890.1 | cell division protein ZapD | - |
| RK51_RS05835 (RK51_005835) | coaE | 1117534..1118148 (-) | 615 | WP_005493969.1 | dephospho-CoA kinase | - |
| RK51_RS05840 (RK51_005840) | pilD | 1118149..1119018 (-) | 870 | WP_005493974.1 | A24 family peptidase | Machinery gene |
| RK51_RS05845 (RK51_005845) | pilC | 1119083..1120306 (-) | 1224 | WP_005493981.1 | type II secretion system F family protein | Machinery gene |
| RK51_RS05850 (RK51_005850) | pilB | 1120330..1122015 (-) | 1686 | WP_005493983.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| RK51_RS05855 (RK51_005855) | - | 1122017..1122469 (-) | 453 | WP_005493986.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| RK51_RS05860 (RK51_005860) | nadC | 1122733..1123620 (-) | 888 | WP_005493988.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32377.43 Da Isoelectric Point: 7.1971
>NTDB_id=265975 RK51_RS05840 WP_005493974.1 1118149..1119018(-) (pilD) [Vibrio parahaemolyticus strain FDAARGOS_51]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWASLIWGDQILSWYFTSILGV
Nucleotide
Download Length: 870 bp
>NTDB_id=265975 RK51_RS05840 WP_005493974.1 1118149..1119018(-) (pilD) [Vibrio parahaemolyticus strain FDAARGOS_51]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTAATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCTGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTAATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCTGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGCAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGAGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
88.927 |
100 |
0.889 |
| pilD | Vibrio cholerae strain A1552 |
73.611 |
99.654 |
0.734 |
| pilD | Acinetobacter baumannii D1279779 |
52.239 |
92.734 |
0.484 |
| pilD | Acinetobacter nosocomialis M2 |
51.866 |
92.734 |
0.481 |
| pilD | Neisseria gonorrhoeae MS11 |
47.101 |
95.502 |
0.45 |