Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | RK51_RS04485 | Genome accession | NZ_CP026041 |
| Coordinates | 866628..867206 (+) | Length | 192 a.a. |
| NCBI ID | WP_005496569.1 | Uniprot ID | A0AAX0M4K7 |
| Organism | Vibrio parahaemolyticus strain FDAARGOS_51 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 861628..872206
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RK51_RS04470 (RK51_004470) | oxyR | 861951..862859 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| RK51_RS04475 (RK51_004475) | - | 862915..865485 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| RK51_RS04480 (RK51_004480) | pilM | 865628..866644 (+) | 1017 | WP_005496568.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| RK51_RS04485 (RK51_004485) | pilN | 866628..867206 (+) | 579 | WP_005496569.1 | PilN domain-containing protein | Machinery gene |
| RK51_RS04490 (RK51_004490) | pilO | 867199..867792 (+) | 594 | WP_005496571.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| RK51_RS04495 (RK51_004495) | pilP | 867782..868297 (+) | 516 | WP_005454781.1 | pilus assembly protein PilP | Machinery gene |
| RK51_RS04500 (RK51_004500) | pilQ | 868329..870077 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| RK51_RS04505 (RK51_004505) | aroK | 870266..870784 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| RK51_RS04510 (RK51_004510) | aroB | 870816..871916 (+) | 1101 | WP_005496576.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22478.98 Da Isoelectric Point: 7.0769
>NTDB_id=265962 RK51_RS04485 WP_005496569.1 866628..867206(+) (pilN) [Vibrio parahaemolyticus strain FDAARGOS_51]
MLYRINLLHWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLHWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=265962 RK51_RS04485 WP_005496569.1 866628..867206(+) (pilN) [Vibrio parahaemolyticus strain FDAARGOS_51]
GTGCTGTATCGCATTAACTTATTGCATTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTAGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCATTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTAGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.431 |
94.271 |
0.589 |