Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OEOE_RS01520 Genome accession   NC_008528
Coordinates   308286..309698 (+) Length   470 a.a.
NCBI ID   WP_011677416.1    Uniprot ID   Q04GX8
Organism   Oenococcus oeni PSU-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 303286..314698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEOE_RS01480 (OEOE_0310) - 303793..304461 (+) 669 WP_002818134.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  OEOE_RS01485 (OEOE_0311) - 304636..304914 (+) 279 WP_002817904.1 hypothetical protein -
  OEOE_RS01490 (OEOE_0312) - 304920..305525 (+) 606 WP_002818135.1 DNA-3-methyladenine glycosylase I -
  OEOE_RS01495 (OEOE_0313) - 305529..306572 (-) 1044 WP_011677414.1 AI-2E family transporter -
  OEOE_RS01500 (OEOE_0314) - 306663..306956 (-) 294 WP_002822408.1 GNAT family N-acetyltransferase -
  OEOE_RS01505 (OEOE_0315) - 307060..307251 (+) 192 WP_002818138.1 hypothetical protein -
  OEOE_RS01510 (OEOE_0316) - 307325..307780 (+) 456 WP_011677415.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  OEOE_RS01515 (OEOE_0317) - 307780..308250 (+) 471 WP_002818140.1 NUDIX hydrolase -
  OEOE_RS01520 (OEOE_0318) radA 308286..309698 (+) 1413 WP_011677416.1 DNA repair protein RadA Machinery gene
  OEOE_RS01525 (OEOE_0319) pgmB 309717..310388 (+) 672 WP_011677417.1 beta-phosphoglucomutase -
  OEOE_RS01530 (OEOE_0320) rdgB 310484..311098 (+) 615 WP_002818142.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  OEOE_RS01535 (OEOE_0321) gltX 311121..312617 (+) 1497 WP_011677418.1 glutamate--tRNA ligase -
  OEOE_RS01540 (OEOE_0322) - 312739..313557 (+) 819 WP_002817894.1 phosphoribosyltransferase -
  OEOE_RS01545 (OEOE_0323) - 313598..314155 (+) 558 WP_002818145.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 50728.17 Da        Isoelectric Point: 6.7597

>NTDB_id=26595 OEOE_RS01520 WP_011677416.1 308286..309698(+) (radA) [Oenococcus oeni PSU-1]
MAKAKTQFICSNCGYTSARYLGRCPNCGQWNTLIEEKIVPEAVVNRKARISFDGRVAKPKKISEISGNELPRTRTGLREL
NRVLGGGIVPGSLILIGGDPGIGKSTLMLQVSGQLAENGGSVLYVSGEESDNQIKLRADRLGVGSDSFIVYPETDMEQIK
SIVQQIEPDYLVIDSVQTMQEPDLQSPIGSVAQIREVTANLMQIAKTNAITVFIVGHVTKDGSIAGPKILEHMVDTVLYF
EGDANYKYRILRTVKNRFGSTNELGIFEMRDHGLREVANPSEIFLEERLAGATGSAITASMEGSRPILVEVQALVAPTVF
GNAQRVTTGVDRNRVSQILAVLEKHANLLLQNQDAHVRITGGVKIDEPAADLAIALAVASSYHEKATNASDVFLGEVGLG
GEVRSISLIEDRLKEIAKLGFKRAIVSKNNLAGIDLPKGLQVIGVSTLEEALKLGLDLNRASKQKGFADL

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=26595 OEOE_RS01520 WP_011677416.1 308286..309698(+) (radA) [Oenococcus oeni PSU-1]
ATGGCAAAAGCAAAAACACAATTTATTTGTTCCAACTGTGGCTATACCAGTGCTCGCTATCTTGGGCGCTGTCCGAATTG
CGGCCAATGGAATACATTAATAGAGGAAAAAATTGTTCCCGAAGCAGTTGTAAACCGAAAAGCTCGAATCAGTTTCGACG
GGCGGGTTGCCAAACCGAAAAAGATTTCTGAAATCTCCGGTAATGAATTACCTAGAACAAGGACTGGATTAAGGGAATTA
AATCGCGTCCTTGGCGGTGGGATCGTCCCGGGAAGCTTAATTTTGATTGGCGGCGATCCAGGAATCGGGAAATCGACTTT
AATGCTTCAGGTTTCTGGTCAGTTGGCCGAAAATGGCGGAAGTGTTCTTTATGTTTCCGGAGAAGAGTCGGATAATCAGA
TTAAATTGCGTGCTGATCGACTTGGAGTTGGTTCGGATTCTTTTATTGTTTATCCGGAAACGGATATGGAACAAATTAAA
TCAATTGTCCAACAAATCGAACCGGATTATTTGGTAATTGATTCGGTTCAGACGATGCAGGAACCTGATCTGCAGTCGCC
AATTGGCTCGGTTGCCCAAATACGAGAAGTGACGGCCAACTTAATGCAGATCGCCAAAACGAATGCAATTACGGTTTTCA
TTGTCGGGCATGTTACTAAAGATGGATCGATCGCCGGTCCGAAAATTCTCGAGCACATGGTTGATACGGTTCTGTATTTT
GAAGGGGATGCCAATTACAAGTACCGGATCCTCCGAACTGTTAAAAATCGTTTTGGATCGACCAATGAACTTGGTATCTT
TGAAATGCGTGATCATGGTTTACGAGAAGTAGCCAATCCTTCGGAGATCTTTCTCGAAGAGCGTTTGGCCGGCGCAACCG
GATCGGCAATTACAGCCAGTATGGAGGGCAGTCGTCCGATTTTAGTCGAAGTGCAGGCTTTGGTCGCACCAACGGTTTTC
GGTAACGCTCAGCGTGTGACAACCGGCGTTGATCGAAATCGCGTTTCTCAGATTTTAGCCGTTTTGGAAAAACATGCCAA
TCTGCTTTTACAAAATCAGGATGCCCATGTTCGAATTACCGGAGGCGTTAAAATCGACGAGCCGGCAGCTGATTTGGCAA
TTGCTTTAGCCGTTGCCAGTTCTTACCATGAAAAAGCAACTAATGCTTCCGATGTTTTTCTTGGTGAAGTAGGTTTGGGA
GGAGAAGTCCGTTCAATTTCTCTGATTGAGGATCGTTTGAAAGAGATTGCCAAGCTTGGATTTAAACGGGCAATTGTTTC
AAAAAATAATTTGGCAGGAATCGATTTGCCAAAAGGTCTGCAGGTGATTGGTGTTTCTACTTTGGAAGAAGCATTGAAAT
TAGGCCTTGATTTGAATAGGGCTTCCAAACAGAAAGGTTTTGCTGATTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(76-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q04GX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

61.269

97.234

0.596
  radA Streptococcus pneumoniae Rx1

61.589

96.383

0.594
  radA Streptococcus pneumoniae D39

61.589

96.383

0.594
  radA Streptococcus pneumoniae R6

61.589

96.383

0.594
  radA Streptococcus pneumoniae TIGR4

61.589

96.383

0.594
  radA Streptococcus mitis NCTC 12261

61.369

96.383

0.591
  radA Streptococcus mitis SK321

61.148

96.383

0.589

Multiple sequence alignment