Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C2I17_RS21805 Genome accession   NZ_CP026040
Coordinates   4555641..4557329 (+) Length   562 a.a.
NCBI ID   WP_123257905.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4550641..4562329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I17_RS21785 (C2I17_21595) - 4550820..4551713 (+) 894 WP_095332859.1 polyprenyl synthetase family protein -
  C2I17_RS21790 (C2I17_21600) dxs 4552151..4554043 (+) 1893 WP_249879593.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C2I17_RS21795 (C2I17_21605) - 4554051..4554881 (+) 831 WP_095332863.1 TlyA family RNA methyltransferase -
  C2I17_RS21800 (C2I17_21610) ahrC 4555175..4555624 (+) 450 WP_047941121.1 transcriptional regulator AhrC/ArgR -
  C2I17_RS21805 (C2I17_21615) recN 4555641..4557329 (+) 1689 WP_123257905.1 DNA repair protein RecN Machinery gene
  C2I17_RS21810 (C2I17_21620) spoIVB 4557540..4558832 (+) 1293 WP_249878256.1 SpoIVB peptidase -
  C2I17_RS21815 (C2I17_21625) - 4558896..4559810 (-) 915 WP_095332869.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  C2I17_RS21820 (C2I17_21630) spo0A 4560286..4561068 (+) 783 WP_047941117.1 sporulation transcription factor Spo0A -
  C2I17_RS21825 (C2I17_21635) - 4561314..4561787 (-) 474 WP_249878257.1 hypothetical protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63495.62 Da        Isoelectric Point: 4.9259

>NTDB_id=265948 C2I17_RS21805 WP_123257905.1 4555641..4557329(+) (recN) [Niallia circulans strain PK3_15]
MLSELSIKNFAIIESLSISFKKGLTVLTGETGAGKSIIIDAINLLVGGRGSAEFVRHGEEKAEIEGLFYIEDGHPCFQKM
NEFGIDIDEGAIVLRRDIALSGKSVCRINGKLITIAVLREIGSTLIDIHGQHEHQELMDETKHLQLLDTFAMGELAPVLE
EYEEIYRSYTQTQKKLMNLTENEQQMAQRLDLLQFQFNEIEGAHLKINEDDELLEERKKLSNFEKIYDSIQTGYTALRGE
QKGLDWLGEVMGNMEEAASLDTEYKEMAESVSNSYYILEDIARQMRSALDYLEYDPERLNEIETRLNEINTLKRKYGKTV
AEILEYAAKIEEELETLQNKETHIDLLERELASLKKDLLVEAKELTALRKRAALRLTDSIHQELKELYMEKTVFEVRIHA
DENNVTKKGIDEVEFYISTNPGEPLKPLSKIVSGGELSRMMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIHH
VSVDSQVLCISHLPQVAAMADTHLFIAKKIEDGRTSTSVTPLVQQDKVKEIGRMISGAEITELTKKHAKELLKLAQKAKN
KI

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=265948 C2I17_RS21805 WP_123257905.1 4555641..4557329(+) (recN) [Niallia circulans strain PK3_15]
TTGCTAAGTGAATTATCGATTAAAAATTTTGCAATCATTGAAAGTCTATCCATATCCTTTAAAAAGGGGCTGACTGTATT
AACTGGTGAAACGGGCGCAGGAAAGTCTATCATTATTGATGCAATCAATTTATTAGTTGGCGGCCGCGGTTCGGCGGAAT
TTGTTCGGCATGGAGAAGAAAAAGCAGAAATAGAAGGGCTATTTTATATAGAAGACGGTCATCCCTGTTTTCAAAAAATG
AATGAGTTTGGTATCGATATAGATGAGGGTGCTATTGTATTAAGAAGAGATATTGCTTTATCTGGTAAGAGTGTCTGCCG
GATAAATGGCAAGCTTATCACAATCGCCGTATTAAGAGAAATAGGTTCCACTTTAATTGATATTCACGGTCAGCATGAAC
ATCAAGAATTAATGGATGAAACAAAGCATTTACAGTTGCTGGATACTTTTGCAATGGGAGAATTAGCTCCTGTTTTAGAA
GAATATGAAGAAATTTATCGATCTTATACACAAACTCAAAAGAAACTTATGAATTTAACAGAAAATGAACAGCAAATGGC
CCAACGACTTGATTTACTACAGTTTCAGTTCAATGAAATTGAAGGTGCTCATTTGAAAATCAACGAAGATGATGAACTGT
TAGAAGAAAGAAAGAAATTAAGCAATTTCGAGAAAATTTATGATAGCATACAAACAGGTTATACTGCCCTAAGAGGAGAA
CAAAAGGGGCTGGACTGGCTTGGCGAGGTTATGGGAAATATGGAGGAAGCTGCAAGCTTAGACACCGAATATAAGGAAAT
GGCTGAATCTGTCTCCAATAGCTATTATATTTTAGAGGATATTGCAAGACAGATGAGAAGCGCTTTAGATTACCTGGAAT
ATGATCCCGAAAGGCTTAATGAGATTGAAACAAGACTGAATGAAATCAATACCTTAAAACGTAAATATGGAAAAACAGTA
GCAGAGATTTTAGAGTATGCTGCGAAAATCGAGGAAGAATTAGAAACATTACAAAACAAAGAAACGCATATCGATTTGTT
GGAAAGGGAGTTAGCCTCTCTTAAGAAAGATCTTTTAGTGGAAGCAAAGGAATTGACTGCCTTAAGAAAGAGAGCGGCTC
TTCGTCTCACAGATAGTATTCATCAAGAATTAAAAGAACTCTACATGGAAAAGACTGTTTTTGAAGTAAGAATTCATGCA
GATGAGAATAATGTTACGAAAAAAGGGATAGACGAAGTGGAATTTTACATTTCTACAAATCCTGGAGAACCATTAAAACC
ACTATCCAAAATTGTGTCCGGTGGAGAGCTTTCTAGAATGATGCTAGCTTTAAAAAGCATTTTCTCTAAGCATCAAGGAG
TGACATCCATCATATTTGATGAGGTTGATACCGGTGTGAGTGGAAGAGTAGCACAAGCAATCGCTGAGAAAATCCACCAT
GTGTCGGTTGATTCTCAAGTGCTCTGTATTTCCCATCTGCCGCAGGTGGCAGCAATGGCAGATACCCATCTATTTATCGC
TAAAAAAATTGAAGATGGCCGCACATCTACGTCTGTAACACCATTAGTGCAGCAAGATAAGGTAAAAGAGATAGGACGAA
TGATTTCAGGAGCGGAAATTACGGAATTAACAAAAAAACATGCAAAAGAACTGTTAAAATTAGCGCAAAAAGCTAAGAAT
AAAATATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.718

100

0.641

Multiple sequence alignment