Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   DXX82_RS03550 Genome accession   NZ_CP031477
Coordinates   733863..735728 (-) Length   621 a.a.
NCBI ID   WP_115911524.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 728863..740728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS03530 - 729202..730446 (+) 1245 WP_049368275.1 O-antigen ligase -
  DXX82_RS03535 - 730443..731474 (+) 1032 WP_111406599.1 glycosyltransferase family 9 protein -
  DXX82_RS03540 - 731424..732089 (-) 666 WP_049368277.1 YitT family protein -
  DXX82_RS03545 - 732280..733821 (+) 1542 WP_111406598.1 YjjI family glycine radical enzyme -
  DXX82_RS03550 recQ 733863..735728 (-) 1866 WP_115911524.1 DNA helicase RecQ Machinery gene
  DXX82_RS03555 cyaY 735728..736033 (-) 306 WP_115911526.1 iron donor protein CyaY -
  DXX82_RS10425 - 736129..736254 (+) 126 WP_111328511.1 lipoprotein -
  DXX82_RS03565 lysA 736282..737532 (+) 1251 WP_115911528.1 diaminopimelate decarboxylase -
  DXX82_RS03570 hemN 737589..738956 (-) 1368 WP_115911530.1 oxygen-independent coproporphyrinogen III oxidase -
  DXX82_RS03575 - 738956..739399 (-) 444 WP_115911533.1 DUF2489 domain-containing protein -
  DXX82_RS03580 yihI 739405..739962 (-) 558 WP_115911536.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 70283.71 Da        Isoelectric Point: 7.8831

>NTDB_id=265939 DXX82_RS03550 WP_115911524.1 733863..735728(-) (recQ) [Haemophilus parainfluenzae strain M27794]
MAELAEHAPQKTDLKTTALTTLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTLVISPLI
SLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQLKLLYVSPEKVMTNSFFQLISYAQISFIAIDEAHCISQWG
HDFRPEYTQLGGLKAAFPNAPIMALTATADYATRQDILTHLKLDNPHKYIGSFDRPNIRYTLEEKFKPMEQLTRFVLAQK
GKSGIVYCNSRSKVERIAETLRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPR
SIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEYRQT
PCQNCDICLDPPKKYDGLIDAQKVMSTIYRVGQCFGVQYVIAVLRGMHNQKIVERQHDKLSVYGIGKDKSKEHWQSVIRQ
LIHLGFIQQVIGEFNSATLQLTESARPVLKGEVPLELAMPRISSINKIVHTSHKNTVANYDKDLFARLRFLRKQLADKEN
IPPYIVFNDATLQEMAQYMPTSNIEMLQINGVGAIKLERFGQPFMALIREHKAILEKAEKD

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=265939 DXX82_RS03550 WP_115911524.1 733863..735728(-) (recQ) [Haemophilus parainfluenzae strain M27794]
ATGGCCGAACTCGCGGAACATGCCCCGCAAAAAACAGACTTAAAAACGACCGCACTTACTACGTTGCGGTCTGTTTTTGG
TTACCAATCTTTCCGCAAAGGGCAGGAAGAAGTGATTCATGCTGCATTAAGCGGTCAAGATGCCTTAGTGGTGATGGCCA
CAGGAAATGGCAAATCCTTGTGTTATCAAATTCCAGCACTTTGTTTTCCTGGTCTCACATTAGTGATTTCGCCTTTGATT
TCTTTAATGAAAGATCAGGTGGATCAACTCCAAGCAAACGGCATTGAAGCCGATTTTCTAAACTCCAGTCAGACGCCAGA
ACAACAACAGCAAGTTGAAAATAAGCTGATTTCAGGTCAATTAAAATTATTATATGTTTCGCCTGAAAAAGTGATGACAA
ATAGCTTTTTTCAGCTGATTTCTTATGCTCAAATTTCCTTTATCGCCATTGATGAAGCCCATTGTATTTCACAATGGGGA
CATGATTTCCGCCCTGAATATACCCAACTTGGTGGCTTAAAAGCGGCTTTTCCAAATGCGCCGATTATGGCATTAACGGC
CACGGCTGATTATGCGACAAGACAGGATATTCTCACTCATCTTAAATTAGATAATCCTCATAAATATATTGGCAGTTTTG
ACCGTCCAAATATTCGTTATACGTTGGAAGAAAAGTTTAAGCCAATGGAGCAGCTTACGCGTTTTGTTTTAGCTCAAAAA
GGAAAAAGCGGCATTGTATATTGTAATAGTCGCTCGAAGGTTGAGCGTATAGCCGAAACTTTGCGAAATAAAGGTGTGTC
CGCTGCAGCGTATCATGCAGGGATGGAAACAGCACTACGTGAACGCGTCCAACAAGATTTTCAACGAGATAATGTTCAAG
TTGTAGTTGCGACGATTGCGTTTGGCATGGGCATTAATAAATCCAATGTGCGTTTTGTCGCCCATTTTGATTTGCCTAGA
AGTATTGAATCATATTACCAAGAAACCGGTCGCGCGGGGCGAGATGATTTACCTGCGGAAGCAGTGCTTTTCTACGAACC
GGCTGATTATGCTTGGTTGCAGAAAATTTTGTTGGAGAAACCAGAGACGCCACAACGTCAAATTGAGCAACATAAATTAG
AGGCCATTGGTGAGTTTGCCGAAAGCCAGACTTGCCGACGTTTGGTCTTACTCAATTATTTTGGTGAATATCGTCAAACG
CCTTGCCAAAACTGCGATATTTGTCTTGACCCGCCCAAGAAATATGACGGTTTAATTGATGCCCAAAAAGTGATGTCGAC
GATTTATCGTGTGGGGCAGTGTTTCGGCGTGCAATATGTGATTGCGGTATTGCGAGGGATGCATAATCAAAAAATTGTAG
AACGCCAACATGATAAGTTAAGTGTTTATGGCATTGGTAAAGATAAAAGCAAAGAACATTGGCAATCCGTGATTCGCCAG
CTTATCCACCTTGGTTTTATTCAACAAGTGATCGGTGAGTTTAATAGTGCAACGCTTCAGCTCACAGAAAGTGCACGCCC
TGTTTTAAAAGGCGAAGTGCCGCTTGAATTAGCGATGCCGCGCATTTCATCCATTAATAAAATTGTGCATACATCCCATA
AAAATACAGTGGCAAATTATGATAAAGATTTGTTTGCTCGTTTGCGTTTCCTACGGAAGCAGCTTGCGGATAAGGAAAAT
ATTCCACCGTATATTGTCTTTAACGATGCGACGTTGCAGGAAATGGCACAATATATGCCAACAAGTAATATTGAAATGCT
ACAAATTAATGGGGTAGGTGCGATCAAATTAGAACGCTTTGGACAGCCGTTTATGGCTTTAATTCGAGAGCATAAAGCAA
TTTTAGAAAAGGCAGAAAAAGACTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(348-409)

Helicase conserved C-terminal domain (Helicase_C)

(230-334)

RQC domain (RQC)

(411-521)

DEAD/DEAH box helicase (DEAD)

(34-190)

HRDC domain (HRDC)

(542-608)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.196

96.135

0.377