Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DXX82_RS02925 Genome accession   NZ_CP031477
Coordinates   619986..620588 (-) Length   200 a.a.
NCBI ID   WP_005696838.1    Uniprot ID   A0ABP2NW55
Organism   Haemophilus parainfluenzae strain M27794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 614986..625588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS02900 - 615361..615828 (+) 468 WP_115911411.1 hypothetical protein -
  DXX82_RS02905 - 615918..617339 (-) 1422 WP_115911413.1 sucrose-specific PTS transporter subunit IIBC -
  DXX82_RS02915 secG 617574..617921 (-) 348 WP_005698620.1 preprotein translocase subunit SecG -
  DXX82_RS02920 - 618038..619981 (-) 1944 WP_115911415.1 DNA topoisomerase III -
  DXX82_RS02925 recR 619986..620588 (-) 603 WP_005696838.1 recombination mediator RecR Machinery gene
  DXX82_RS02930 - 620650..620979 (-) 330 WP_005696839.1 YbaB/EbfC family nucleoid-associated protein -
  DXX82_RS02935 - 621115..622206 (+) 1092 WP_115911417.1 metallophosphoesterase -
  DXX82_RS02940 - 622252..623622 (-) 1371 WP_102703617.1 L-serine ammonia-lyase -
  DXX82_RS02945 - 623658..624896 (-) 1239 WP_102703616.1 HAAAP family serine/threonine permease -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22056.16 Da        Isoelectric Point: 6.3981

>NTDB_id=265937 DXX82_RS02925 WP_005696838.1 619986..620588(-) (recR) [Haemophilus parainfluenzae strain M27794]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEETCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEI
CHQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=265937 DXX82_RS02925 WP_005696838.1 619986..620588(-) (recR) [Haemophilus parainfluenzae strain M27794]
ATGCAAAGCAGTCCACTTTTAGAACATCTTATTGAAAACCTTCGTTGCTTGCCTGGTGTTGGCCCGAAATCAGCGCAGCG
TATGGCTTATCATCTTTTACAGCGCAATCGTAGCGGTGGAATGAACCTAGCACGTGCATTAACGGAAGCGATGTCTAAAA
TTGGACATTGTTCACAGTGTCGCGATTTTACCGAAGAGGAAACGTGCAATATTTGTAACAATCCTCGCCGTCAAAATTCA
GGTTTGCTTTGCGTGGTGGAAATGCCGGCAGACATTCAAGCCATTGAGCAAACAGGCCAATTTTCTGGGCGTTATTTTGT
CTTAATGGGACATTTATCGCCTTTAGATGGTATTGGTCCGAAAGAAATTGGTTTAGATTTATTGCAAAAACGTCTGGTAG
AAGAATCTTTCCATGAAGTGATTTTAGCGACCAATCCAACGGTAGAAGGCGATGCGACAGCCAATTATATTGCTGAAATT
TGCCATCAACATAATATTAAAGTGAGCCGTATTGCCCATGGGATCCCTGTCGGTGGGGAATTAGAAACCGTGGACGGCAC
TACCTTAACCCACTCTTTCTTAGGTCGTCGTCAGATCGACTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

99.5

0.435
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.5

0.435