Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DXX82_RS01485 Genome accession   NZ_CP031477
Coordinates   322139..322609 (+) Length   156 a.a.
NCBI ID   WP_012564928.1    Uniprot ID   Q6A294
Organism   Haemophilus parainfluenzae strain M27794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 317139..327609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS01465 - 317238..317795 (-) 558 WP_115911062.1 hypothetical protein -
  DXX82_RS01470 - 317886..319931 (+) 2046 WP_005687564.1 DNA topoisomerase III -
  DXX82_RS01475 - 320816..321244 (+) 429 WP_014326562.1 STY4534 family ICE replication protein -
  DXX82_RS01480 - 321359..322000 (+) 642 WP_115911064.1 DUF3560 domain-containing protein -
  DXX82_RS01485 radC 322139..322609 (+) 471 WP_012564928.1 DNA repair protein RadC Machinery gene
  DXX82_RS01490 - 322702..323298 (+) 597 WP_115911066.1 hypothetical protein -
  DXX82_RS01495 - 323389..324120 (+) 732 WP_105891584.1 TraX family protein -
  DXX82_RS01500 - 324219..324848 (+) 630 WP_012564935.1 lipoprotein -
  DXX82_RS01505 - 324853..325593 (+) 741 WP_049370069.1 TIGR03759 family integrating conjugative element protein -
  DXX82_RS01510 - 325572..326330 (+) 759 WP_049370068.1 transglycosylase SLT domain-containing protein -
  DXX82_RS01515 - 326346..326852 (+) 507 WP_011271841.1 integrating conjugative element protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17891.67 Da        Isoelectric Point: 5.6095

>NTDB_id=265930 DXX82_RS01485 WP_012564928.1 322139..322609(+) (radC) [Haemophilus parainfluenzae strain M27794]
MFKLNEQQQAILEQAQVILTKVMEEKPFYQGAQEFTEPSIAKLYFQTIIGNEERENFVVLFLDRMHRLIKSEVMFQGSVS
EISVSIREIIRQALKLNASAIIIGHNHPTGNVEPSDADKYITKRLKEACELMEIKLLDHFIVSGSASFCFTDNHLM

Nucleotide


Download         Length: 471 bp        

>NTDB_id=265930 DXX82_RS01485 WP_012564928.1 322139..322609(+) (radC) [Haemophilus parainfluenzae strain M27794]
ATGTTTAAATTAAACGAGCAACAACAAGCTATTTTAGAACAGGCACAGGTTATTTTAACTAAAGTGATGGAAGAAAAGCC
CTTTTACCAAGGTGCACAGGAATTTACTGAGCCATCAATAGCTAAACTCTATTTTCAAACCATTATAGGGAATGAAGAAA
GAGAAAATTTCGTGGTACTTTTCTTGGATAGAATGCACAGATTGATTAAATCTGAGGTGATGTTTCAAGGATCTGTTTCA
GAAATTTCTGTGTCGATTCGGGAGATTATTCGACAGGCATTAAAGCTAAATGCATCAGCAATTATCATTGGGCACAATCA
TCCAACTGGAAATGTTGAGCCTAGTGATGCTGACAAATATATAACCAAGAGATTAAAGGAAGCTTGTGAATTAATGGAAA
TTAAATTACTTGATCACTTTATCGTTTCTGGTTCTGCGTCTTTTTGCTTTACTGATAATCATCTTATGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(37-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6A294

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.333

96.154

0.436