Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C2I17_RS10300 Genome accession   NZ_CP026040
Coordinates   2174804..2175760 (-) Length   318 a.a.
NCBI ID   WP_047944228.1    Uniprot ID   A0A0J1L0Y7
Organism   Niallia circulans strain PK3_15     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2169804..2180760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I17_RS10280 (C2I17_10165) - 2170711..2171703 (-) 993 WP_249879374.1 Gfo/Idh/MocA family protein -
  C2I17_RS10285 (C2I17_10170) - 2171872..2172822 (-) 951 WP_095331085.1 siderophore ABC transporter substrate-binding protein -
  C2I17_RS10290 (C2I17_10175) - 2173109..2173867 (-) 759 WP_095331086.1 ABC transporter ATP-binding protein -
  C2I17_RS10295 (C2I17_10180) - 2173861..2174814 (-) 954 WP_123259195.1 iron chelate uptake ABC transporter family permease subunit -
  C2I17_RS10300 (C2I17_10185) ceuB 2174804..2175760 (-) 957 WP_047944228.1 ABC transporter permease Machinery gene
  C2I17_RS10305 (C2I17_10190) qoxD 2175995..2176300 (-) 306 WP_047944233.1 cytochrome aa3 quinol oxidase subunit IV -
  C2I17_RS10310 (C2I17_10195) qoxC 2176307..2176909 (-) 603 WP_095322681.1 cytochrome aa3 quinol oxidase subunit III -
  C2I17_RS10315 (C2I17_10200) qoxB 2176909..2178861 (-) 1953 WP_095331089.1 cytochrome aa3 quinol oxidase subunit I -
  C2I17_RS10320 (C2I17_10205) qoxA 2178851..2179780 (-) 930 WP_095331091.1 cytochrome aa3 quinol oxidase subunit II -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35245.62 Da        Isoelectric Point: 9.7763

>NTDB_id=265914 C2I17_RS10300 WP_047944228.1 2174804..2175760(-) (ceuB) [Niallia circulans strain PK3_15]
MKIRHLTIMLIVLSIISLFVGVIDIHPQNIFHLTADQREILLISRFPRLVSIIIAGVSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILVALMLFTGESPIIKMLIAFVFALGGTFLFMRILNMIKFKDAIFIPLIGLMLGNIVSSITTFFAMKYDLI
QNMSSWLQGDFSLIMEGRYELLYISIPMVIVAYLYANKFTIAGLGEDFSTNLGLNHKRVVNIGLIIVALVSSVVLLTVGM
IPFLGLIIPNIVSLYRGDNLKNSLTHTALLGAVFVLFCDILGRVIIYPYEISIGVMVGVIGSGVFLYLLVRRKSYDAT

Nucleotide


Download         Length: 957 bp        

>NTDB_id=265914 C2I17_RS10300 WP_047944228.1 2174804..2175760(-) (ceuB) [Niallia circulans strain PK3_15]
ATGAAAATTAGACACTTAACTATAATGTTAATAGTTTTATCTATCATCTCCCTATTTGTAGGAGTAATTGATATTCATCC
ACAAAATATTTTTCATTTAACTGCAGATCAGAGAGAAATTCTCTTGATTAGCAGATTTCCTCGCTTAGTCAGTATTATTA
TAGCTGGTGTTAGTCTAAGTATTTGTGGACTTATCATGCAGCAGATATCGAGGAATAAATTTGTTTCTCCTACAACTGCT
GGAACAATGGACTGGGCGAGACTTGGGATATTAGTAGCTTTAATGCTTTTTACAGGCGAGAGCCCGATTATTAAAATGTT
AATCGCTTTTGTATTCGCACTCGGAGGAACCTTTTTGTTTATGCGAATACTTAATATGATTAAATTTAAAGATGCTATCT
TTATTCCATTAATTGGTTTAATGCTAGGGAATATTGTTAGCTCGATTACCACTTTTTTTGCAATGAAATATGATTTGATT
CAAAATATGTCTTCATGGTTACAAGGTGATTTTTCTTTAATCATGGAAGGGCGTTATGAACTTCTTTACATAAGTATTCC
GATGGTTATTGTTGCATACTTATATGCAAATAAATTTACAATTGCTGGATTGGGTGAGGATTTTTCTACTAATCTTGGTC
TCAATCACAAAAGAGTAGTGAATATAGGGTTAATTATCGTAGCGTTAGTTTCTTCTGTTGTATTGCTGACAGTAGGAATG
ATTCCTTTTCTAGGTCTAATCATTCCCAATATCGTTTCGTTATACAGAGGAGATAATTTGAAAAATAGCTTGACCCATAC
AGCATTATTAGGAGCAGTCTTTGTATTATTCTGTGATATTCTTGGAAGAGTGATTATTTATCCGTATGAGATATCGATCG
GTGTGATGGTGGGAGTCATCGGAAGTGGAGTATTCTTGTATTTACTAGTAAGGAGAAAGTCTTATGATGCAACCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1L0Y7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.381

99.057

0.519

Multiple sequence alignment