Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CP913_RS25215 Genome accession   NZ_CP031449
Coordinates   5173733..5174227 (-) Length   164 a.a.
NCBI ID   WP_023657710.1    Uniprot ID   A0A4S3KF25
Organism   Pseudomonas aeruginosa strain 97     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5168733..5179227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP913_RS25195 (CP913_15430) - 5168824..5169267 (-) 444 WP_096861881.1 TIGR03757 family integrating conjugative element protein -
  CP913_RS25200 (CP913_15435) - 5169411..5169929 (-) 519 WP_013721898.1 hypothetical protein -
  CP913_RS25205 (CP913_15440) - 5170079..5173042 (-) 2964 WP_003292121.1 class I SAM-dependent DNA methyltransferase -
  CP913_RS25210 (CP913_15445) - 5173039..5173515 (-) 477 WP_003292122.1 MerR family transcriptional regulator -
  CP913_RS25215 (CP913_15450) radC 5173733..5174227 (-) 495 WP_023657710.1 DNA repair protein RadC Machinery gene
  CP913_RS25220 (CP913_15455) - 5174423..5175166 (-) 744 WP_096861882.1 thioredoxin domain-containing protein -
  CP913_RS25225 (CP913_15460) - 5175180..5178068 (-) 2889 WP_071574237.1 conjugative transfer ATPase -
  CP913_RS25230 (CP913_15465) - 5178068..5178502 (-) 435 WP_034021502.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17836.44 Da        Isoelectric Point: 5.9791

>NTDB_id=265879 CP913_RS25215 WP_023657710.1 5173733..5174227(-) (radC) [Pseudomonas aeruginosa strain 97]
MSLVIADSRPESLTLIAAQHEDWIIQQAITLLENRVFKAGPALGSPAAVRDYLRLKLVAEPNEIFAVVFLDNQHQVLSFE
PLFQGTVDQTSVYPRVVVQRALALNASALILAHQHPSGNTEPSAADRAITERLKSALATVDVRVLDHFIVGKGSPYSFAE
AGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=265879 CP913_RS25215 WP_023657710.1 5173733..5174227(-) (radC) [Pseudomonas aeruginosa strain 97]
ATGTCTCTCGTCATCGCCGACTCCCGCCCGGAGTCGCTCACCCTGATCGCCGCCCAGCACGAAGACTGGATCATCCAGCA
GGCCATTACCCTGCTGGAGAACCGCGTGTTCAAGGCCGGTCCGGCGCTGGGCAGTCCCGCCGCCGTGCGCGACTACCTGC
GCCTGAAACTGGTCGCGGAGCCGAACGAAATCTTCGCCGTCGTGTTTCTCGACAACCAGCACCAGGTGCTCTCCTTCGAG
CCGCTGTTCCAGGGCACGGTCGACCAGACTTCGGTGTATCCGAGGGTGGTTGTCCAGCGTGCGCTGGCGCTCAACGCTTC
GGCGCTGATCCTGGCGCATCAGCACCCCTCGGGGAACACCGAGCCCTCGGCCGCTGATCGTGCGATCACCGAGCGGTTGA
AGAGCGCCCTGGCCACCGTCGATGTCCGGGTGCTGGATCACTTCATCGTCGGCAAGGGCAGCCCGTACTCGTTCGCCGAA
GCCGGCTTACTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S3KF25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.26

89.024

0.421

Multiple sequence alignment