Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C2I05_RS12910 Genome accession   NZ_CP026039
Coordinates   2416782..2417231 (-) Length   149 a.a.
NCBI ID   WP_038828489.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK1_2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2411782..2422231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS12870 - 2412110..2412299 (+) 190 Protein_2494 hypothetical protein -
  C2I05_RS12875 (C2I05_12870) yckC 2412319..2412774 (+) 456 WP_014475763.1 RDD family protein -
  C2I05_RS12880 (C2I05_12875) yckD 2412857..2413189 (+) 333 WP_120027762.1 YckD family protein -
  C2I05_RS12885 (C2I05_12880) - 2413317..2413739 (+) 423 WP_170939093.1 MarR family transcriptional regulator -
  C2I05_RS12890 (C2I05_12885) - 2413727..2414068 (+) 342 WP_032724911.1 DUF3147 family protein -
  C2I05_RS12895 (C2I05_12890) - 2414087..2414815 (+) 729 WP_021481826.1 AAA family ATPase -
  C2I05_RS12900 (C2I05_12895) bglC 2414887..2416320 (+) 1434 WP_120027763.1 6-phospho-beta-glucosidase -
  C2I05_RS12905 (C2I05_12900) nin/comJ 2416357..2416755 (-) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  C2I05_RS12910 (C2I05_12905) nucA/comI 2416782..2417231 (-) 450 WP_038828489.1 DNA-entry nuclease Machinery gene
  C2I05_RS12915 (C2I05_12910) tlpC 2417399..2419120 (-) 1722 WP_120027764.1 methyl-accepting chemotaxis protein TlpC -
  C2I05_RS12920 (C2I05_12915) hxlB 2419230..2419787 (-) 558 WP_021481820.1 6-phospho-3-hexuloisomerase -
  C2I05_RS12925 (C2I05_12920) hxlA 2419793..2420425 (-) 633 WP_032724921.1 3-hexulose-6-phosphate synthase -
  C2I05_RS12930 (C2I05_12925) hxlR 2420657..2421019 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.46 Da        Isoelectric Point: 4.5282

>NTDB_id=265865 C2I05_RS12910 WP_038828489.1 2416782..2417231(-) (nucA/comI) [Bacillus subtilis strain PK1_2]
MNITTDIIKTILLVIVIIAAAAVGLIKVDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVTSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=265865 C2I05_RS12910 WP_038828489.1 2416782..2417231(-) (nucA/comI) [Bacillus subtilis strain PK1_2]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGTCGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTAACTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973

Multiple sequence alignment