Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C2I05_RS10965 Genome accession   NZ_CP026039
Coordinates   2054971..2056083 (+) Length   370 a.a.
NCBI ID   WP_015715082.1    Uniprot ID   A0A8E0S8Z1
Organism   Bacillus subtilis strain PK1_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2049971..2061083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS10940 (C2I05_10915) rnpA 2050681..2051031 (-) 351 WP_120027688.1 ribonuclease P protein component -
  C2I05_RS10945 (C2I05_10920) rpmH 2051183..2051317 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  C2I05_RS10950 (C2I05_10925) dnaA 2051944..2053284 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  C2I05_RS10955 (C2I05_10930) dnaN 2053473..2054609 (+) 1137 WP_003242509.1 DNA polymerase III subunit beta -
  C2I05_RS10960 (C2I05_10935) rlbA 2054740..2054955 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  C2I05_RS10965 (C2I05_10940) recF 2054971..2056083 (+) 1113 WP_015715082.1 DNA replication/repair protein RecF Machinery gene
  C2I05_RS10970 (C2I05_10945) remB 2056101..2056346 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  C2I05_RS10975 (C2I05_10950) gyrB 2056401..2058317 (+) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  C2I05_RS10980 (C2I05_10955) gyrA 2058528..2060993 (+) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42318.37 Da        Isoelectric Point: 7.3661

>NTDB_id=265858 C2I05_RS10965 WP_015715082.1 2054971..2056083(+) (recF) [Bacillus subtilis strain PK1_2]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLELSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=265858 C2I05_RS10965 WP_015715082.1 2054971..2056083(+) (recF) [Bacillus subtilis strain PK1_2]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTATCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGAGTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTGCAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.73

100

0.997

Multiple sequence alignment