Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CP913_RS13235 Genome accession   NZ_CP031449
Coordinates   2666061..2666558 (-) Length   165 a.a.
NCBI ID   WP_017940311.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 97     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2661061..2671558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP913_RS13215 (CP913_03520) - 2661413..2662012 (+) 600 WP_175425917.1 hypothetical protein -
  CP913_RS13220 (CP913_03525) - 2662009..2664783 (+) 2775 WP_237736604.1 hypothetical protein -
  CP913_RS13225 (CP913_03530) - 2664780..2665766 (+) 987 WP_175425918.1 hypothetical protein -
  CP913_RS34035 (CP913_03535) - 2665869..2666051 (-) 183 WP_096862004.1 hypothetical protein -
  CP913_RS13235 (CP913_03540) radC 2666061..2666558 (-) 498 WP_017940311.1 DNA repair protein RadC Machinery gene
  CP913_RS13240 (CP913_03545) - 2666530..2667480 (-) 951 WP_096862005.1 hydrolase or metal-binding protein -
  CP913_RS13245 (CP913_03550) - 2667572..2668579 (-) 1008 WP_096862006.1 YqaJ viral recombinase family protein -
  CP913_RS13250 (CP913_03555) vapB 2668736..2668966 (+) 231 WP_096862007.1 type II toxin-antitoxin system VapB family antitoxin -
  CP913_RS13255 (CP913_03560) vapC 2668966..2669370 (+) 405 WP_020308731.1 tRNA(fMet)-specific endonuclease VapC -
  CP913_RS13260 (CP913_03565) - 2669457..2670425 (-) 969 WP_096862008.1 DUF932 domain-containing protein -
  CP913_RS34040 (CP913_03570) - 2670485..2670817 (-) 333 WP_036992178.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18262.04 Da        Isoelectric Point: 6.4938

>NTDB_id=265855 CP913_RS13235 WP_017940311.1 2666061..2666558(-) (radC) [Pseudomonas aeruginosa strain 97]
MRLHKLKASDTTGTYLVESPVTENDILLMARQLASLRLRKGRALTSPKEVFSHLQALLADYEHEVFALLMLDSRHRVIAF
EELFRGTLDGASVYPREVVKLALEHNAAALILVHNHPSGDPEPSMADRNLTTKLQDALNLVGVRTLDHIVVGNEGCVSLA
ELGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=265855 CP913_RS13235 WP_017940311.1 2666061..2666558(-) (radC) [Pseudomonas aeruginosa strain 97]
ATGCGCCTGCACAAGCTGAAAGCCAGTGACACGACCGGCACCTACCTGGTCGAGTCGCCGGTGACGGAAAACGACATCCT
GCTGATGGCCAGGCAACTGGCCAGTCTGCGCCTGCGCAAGGGACGTGCACTGACCTCGCCTAAGGAGGTGTTCAGTCACC
TGCAGGCGCTGCTGGCTGATTATGAGCACGAAGTGTTCGCCCTGCTCATGCTCGACAGCCGACACCGGGTGATTGCGTTC
GAGGAGCTGTTCCGGGGGACTCTCGATGGCGCCAGCGTGTATCCCAGGGAGGTTGTGAAGCTCGCCCTGGAACACAACGC
AGCCGCCTTGATCCTGGTGCACAACCACCCTTCGGGTGACCCTGAGCCTAGCATGGCGGATCGCAACCTCACCACGAAAC
TGCAGGACGCGCTGAATCTCGTCGGTGTGCGCACGCTCGATCACATCGTGGTGGGGAACGAAGGCTGCGTGTCACTGGCA
GAACTGGGCTACCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50.847

71.515

0.364