Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C2I05_RS07980 Genome accession   NZ_CP026039
Coordinates   1475378..1476769 (-) Length   463 a.a.
NCBI ID   WP_120027550.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK1_2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1470378..1481769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS07945 (C2I05_07930) flgL 1470549..1471445 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  C2I05_RS07950 (C2I05_07935) flgK 1471456..1472979 (-) 1524 WP_120027547.1 flagellar hook-associated protein FlgK -
  C2I05_RS07955 (C2I05_07940) flgN 1472998..1473480 (-) 483 WP_014481048.1 flagellar protein FlgN -
  C2I05_RS07960 (C2I05_07945) flgM 1473496..1473762 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2I05_RS07965 (C2I05_07950) yvyF 1473843..1474262 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2I05_RS07970 (C2I05_07955) comFC 1474336..1475058 (-) 723 WP_120027548.1 comF operon protein ComFC Machinery gene
  C2I05_RS07975 (C2I05_07960) comFB 1475022..1475318 (-) 297 WP_120027549.1 late competence protein ComFB -
  C2I05_RS07980 (C2I05_07965) comFA 1475378..1476769 (-) 1392 WP_120027550.1 ATP-dependent helicase ComFA Machinery gene
  C2I05_RS07985 (C2I05_07970) fakBA 1476875..1477720 (-) 846 WP_038829896.1 DegV family protein -
  C2I05_RS07990 (C2I05_07975) degU 1477818..1478507 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2I05_RS07995 (C2I05_07980) degS 1478590..1479747 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C2I05_RS08000 (C2I05_07985) yvyE 1479964..1480617 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52515.48 Da        Isoelectric Point: 9.7915

>NTDB_id=265847 C2I05_RS07980 WP_120027550.1 1475378..1476769(-) (comFA) [Bacillus subtilis strain PK1_2]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=265847 C2I05_RS07980 WP_120027550.1 1475378..1476769(-) (comFA) [Bacillus subtilis strain PK1_2]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.272

100

0.983

Multiple sequence alignment