Detailed information NTG0265838

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CP913_RS07675
• Genome accession: NZ_CP031449
• Coordinates: 1581144..1582148 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 97
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1576144..1587148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CP913_RS07645 (CP913_24000)	fghA	1576236..1577087 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
CP913_RS07650 (CP913_24005)	ispF	1577158..1577631 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CP913_RS07655 (CP913_24010)	truD	1577628..1578695 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
CP913_RS07660 (CP913_24015)	surE	1578683..1579432 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CP913_RS07665 (CP913_24020)	-	1579465..1580100 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CP913_RS07670 (CP913_24025)	-	1580146..1581039 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
CP913_RS07675 (CP913_24030)	rpoS	1581144..1582148 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CP913_RS07680 (CP913_24035)	fdxA	1582575..1582898 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CP913_RS07685 (CP913_24040)	mutS	1582965..1585544 (-)	2580	WP_079386749.1	DNA mismatch repair protein MutS	-
CP913_RS07690 (CP913_24045)	-	1585604..1586578 (-)	975	WP_014602574.1	tyrosine-type recombinase/integrase	-
CP913_RS07695 (CP913_24050)	-	1586588..1586797 (-)	210	WP_071538228.1	DUF4224 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=265838 CP913_RS07675 WP_003113871.1 1581144..1582148(+) (rpoS) [Pseudomonas aeruginosa strain 97]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=265838 CP913_RS07675 WP_003113871.1 1581144..1582148(+) (rpoS) [Pseudomonas aeruginosa strain 97]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653