Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C2I05_RS01005 Genome accession   NZ_CP026039
Coordinates   167888..168508 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK1_2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 162888..173508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS00965 (C2I05_00940) ypqE 164020..164526 (-) 507 WP_120028600.1 PTS glucose transporter subunit IIA -
  C2I05_RS00970 (C2I05_00945) ypqA 164664..165083 (+) 420 WP_120028308.1 Hsp20/alpha crystallin family protein -
  C2I05_RS00975 (C2I05_00950) yppG 165104..165481 (-) 378 WP_004398696.1 YppG family protein -
  C2I05_RS00980 (C2I05_00955) yppF 165668..165856 (+) 189 WP_003230690.1 YppF family protein -
  C2I05_RS00985 (C2I05_00960) yppE 165895..166266 (-) 372 WP_021481525.1 YppE family protein -
  C2I05_RS00990 (C2I05_00965) yppD 166312..166557 (-) 246 WP_021481526.1 DUF5446 family protein -
  C2I05_RS00995 (C2I05_00970) sspM 166756..166860 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C2I05_RS01000 (C2I05_00975) yppC 166885..167847 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  C2I05_RS01005 (C2I05_00980) recU 167888..168508 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C2I05_RS01010 (C2I05_00985) ponA 168530..171283 (+) 2754 WP_120028310.1 PBP1A family penicillin-binding protein -
  C2I05_RS01015 (C2I05_00990) ypoC 171358..171852 (-) 495 WP_120028311.1 YpoC family protein -
  C2I05_RS01020 (C2I05_00995) nth 171849..172508 (-) 660 WP_009967580.1 endonuclease III -
  C2I05_RS01025 (C2I05_01000) dnaD 172527..173225 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=265817 C2I05_RS01005 WP_004399067.1 167888..168508(+) (recU) [Bacillus subtilis strain PK1_2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=265817 C2I05_RS01005 WP_004399067.1 167888..168508(+) (recU) [Bacillus subtilis strain PK1_2]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment