Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C2H97_RS21420 Genome accession   NZ_CP026038
Coordinates   4139249..4140052 (-) Length   267 a.a.
NCBI ID   WP_032726121.1    Uniprot ID   -
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4134249..4145052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS21395 (C2H97_21335) glpQ 4135387..4136118 (-) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -
  C2H97_RS21400 (C2H97_21340) yqiI 4136197..4136817 (-) 621 WP_120028356.1 N-acetylmuramoyl-L-alanine amidase -
  C2H97_RS21405 (C2H97_21345) - 4136837..4137133 (-) 297 WP_120028603.1 hypothetical protein -
  C2H97_RS21410 - 4137441..4137593 (+) 153 WP_014480226.1 hypothetical protein -
  C2H97_RS21415 (C2H97_21350) yqiG 4137666..4138784 (+) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  C2H97_RS21420 (C2H97_21355) spo0A 4139249..4140052 (-) 804 WP_032726121.1 sporulation transcription factor Spo0A Regulator
  C2H97_RS21425 (C2H97_21365) spoIVB 4140328..4141608 (-) 1281 WP_032726122.1 SpoIVB peptidase -
  C2H97_RS21430 (C2H97_21370) recN 4141783..4143513 (-) 1731 WP_120028357.1 DNA repair protein RecN Machinery gene
  C2H97_RS21435 (C2H97_21375) argR 4143550..4143999 (-) 450 WP_015384067.1 arginine repressor ArgR -
  C2H97_RS21440 (C2H97_21380) yqxC 4144097..4144942 (-) 846 WP_120028358.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29677.16 Da        Isoelectric Point: 6.3909

>NTDB_id=265815 C2H97_RS21420 WP_032726121.1 4139249..4140052(-) (spo0A) [Bacillus subtilis PY79 strain PK1_3]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=265815 C2H97_RS21420 WP_032726121.1 4139249..4140052(-) (spo0A) [Bacillus subtilis PY79 strain PK1_3]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
TGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996

Multiple sequence alignment