Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C2H97_RS20440 Genome accession   NZ_CP026038
Coordinates   3963117..3963737 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3958117..3968737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS20400 (C2H97_20345) ypqE 3959248..3959754 (-) 507 WP_120028600.1 PTS glucose transporter subunit IIA -
  C2H97_RS20405 (C2H97_20350) ypqA 3959892..3960311 (+) 420 WP_120028308.1 Hsp20/alpha crystallin family protein -
  C2H97_RS20410 (C2H97_20355) yppG 3960332..3960709 (-) 378 WP_004398696.1 YppG family protein -
  C2H97_RS20415 (C2H97_20360) yppF 3960897..3961085 (+) 189 WP_003230690.1 YppF family protein -
  C2H97_RS20420 (C2H97_20365) yppE 3961124..3961495 (-) 372 WP_021481525.1 YppE family protein -
  C2H97_RS20425 (C2H97_20370) yppD 3961541..3961786 (-) 246 WP_021481526.1 DUF5446 family protein -
  C2H97_RS20430 (C2H97_20375) sspM 3961985..3962089 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C2H97_RS20435 (C2H97_20380) yppC 3962114..3963076 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  C2H97_RS20440 (C2H97_20385) recU 3963117..3963737 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C2H97_RS20445 (C2H97_20390) ponA 3963759..3966512 (+) 2754 WP_120028310.1 PBP1A family penicillin-binding protein -
  C2H97_RS20450 (C2H97_20395) ypoC 3966588..3967082 (-) 495 WP_120028311.1 YpoC family protein -
  C2H97_RS20455 (C2H97_20400) nth 3967079..3967738 (-) 660 WP_009967580.1 endonuclease III -
  C2H97_RS20460 (C2H97_20405) dnaD 3967757..3968455 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=265814 C2H97_RS20440 WP_004399067.1 3963117..3963737(+) (recU) [Bacillus subtilis PY79 strain PK1_3]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=265814 C2H97_RS20440 WP_004399067.1 3963117..3963737(+) (recU) [Bacillus subtilis PY79 strain PK1_3]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment