Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DYB08_RS16635 Genome accession   NZ_CP031444
Coordinates   3410328..3410993 (-) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MDR-UNC     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3405328..3415993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB08_RS16615 (DYB08_16625) - 3406614..3406931 (+) 318 WP_000776215.1 hypothetical protein -
  DYB08_RS16620 (DYB08_16630) - 3407048..3407827 (+) 780 WP_001034598.1 M48 family metallopeptidase -
  DYB08_RS16625 (DYB08_16635) - 3407887..3408936 (-) 1050 WP_001159802.1 NADP(H)-dependent aldo-keto reductase -
  DYB08_RS16635 (DYB08_16645) crp 3410328..3410993 (-) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  DYB08_RS20260 - 3411234..3411353 (+) 120 Protein_3202 hypothetical protein -
  DYB08_RS16640 (DYB08_16650) - 3411432..3411854 (+) 423 WP_001195082.1 OsmC family protein -
  DYB08_RS16645 (DYB08_16655) - 3411946..3412371 (+) 426 WP_001026230.1 GNAT family N-acetyltransferase -
  DYB08_RS16650 (DYB08_16660) - 3412368..3413174 (-) 807 WP_001237344.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=265809 DYB08_RS16635 WP_000203219.1 3410328..3410993(-) (crp) [Acinetobacter baumannii strain MDR-UNC]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=265809 DYB08_RS16635 WP_000203219.1 3410328..3410993(-) (crp) [Acinetobacter baumannii strain MDR-UNC]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425

Multiple sequence alignment