Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C2H97_RS14790 Genome accession   NZ_CP026038
Coordinates   2826459..2827037 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2821459..2832037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS14770 (C2H97_14810) hemAT 2821971..2823269 (-) 1299 WP_041338163.1 heme-based aerotactic transducer HemAT -
  C2H97_RS14775 (C2H97_14815) yhfW 2823408..2824937 (-) 1530 WP_120027951.1 FAD-dependent oxidoreductase -
  C2H97_RS14780 (C2H97_14820) yhxC 2825049..2825906 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  C2H97_RS14785 (C2H97_14825) yhzC 2825934..2826167 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  C2H97_RS14790 (C2H97_14830) comK 2826459..2827037 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  C2H97_RS14795 (C2H97_14835) yhxD 2827084..2827983 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  C2H97_RS14800 (C2H97_14840) yhjA 2828200..2828469 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  C2H97_RS14805 (C2H97_14845) yhjB 2828513..2829982 (-) 1470 WP_120027952.1 sodium:solute symporter -
  C2H97_RS14810 (C2H97_14850) yhjC 2829979..2830179 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C2H97_RS14815 (C2H97_14855) - 2830378..2830749 (-) 372 WP_064671203.1 hypothetical protein -
  C2H97_RS14820 (C2H97_14860) yhjE 2830901..2831524 (+) 624 WP_010886465.1 VTT domain-containing protein -
  C2H97_RS14825 (C2H97_14865) lepB 2831526..2832032 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=265795 C2H97_RS14790 WP_029317573.1 2826459..2827037(+) (comK) [Bacillus subtilis PY79 strain PK1_3]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=265795 C2H97_RS14790 WP_029317573.1 2826459..2827037(+) (comK) [Bacillus subtilis PY79 strain PK1_3]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment