Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C2H95_RS14355 Genome accession   NZ_CP026037
Coordinates   2823225..2823845 (+) Length   206 a.a.
NCBI ID   WP_072175980.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_17     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2818225..2828845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS14315 (C2H95_14250) ypqE 2819356..2819862 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  C2H95_RS14320 (C2H95_14255) ypqA 2820000..2820419 (+) 420 WP_015251833.1 Hsp20/alpha crystallin family protein -
  C2H95_RS14325 (C2H95_14260) yppG 2820440..2820817 (-) 378 WP_014477159.1 YppG family protein -
  C2H95_RS14330 (C2H95_14265) yppF 2821005..2821193 (+) 189 WP_003230690.1 YppF family protein -
  C2H95_RS14335 (C2H95_14270) yppE 2821232..2821603 (-) 372 WP_003246080.1 YppE family protein -
  C2H95_RS14340 (C2H95_14275) yppD 2821649..2821894 (-) 246 WP_038828603.1 YppD family protein -
  C2H95_RS14345 (C2H95_14280) sspM 2822093..2822197 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C2H95_RS14350 (C2H95_14285) yppC 2822222..2823184 (-) 963 WP_064671082.1 DUF2515 domain-containing protein -
  C2H95_RS14355 (C2H95_14290) recU 2823225..2823845 (+) 621 WP_072175980.1 Holliday junction resolvase RecU Machinery gene
  C2H95_RS14360 (C2H95_14295) ponA 2823867..2826617 (+) 2751 WP_072175981.1 PBP1A family penicillin-binding protein -
  C2H95_RS14365 (C2H95_14300) ypoC 2826692..2827186 (-) 495 WP_041849962.1 YpoC family protein -
  C2H95_RS14370 (C2H95_14305) nth 2827183..2827842 (-) 660 WP_009967580.1 endonuclease III -
  C2H95_RS14375 (C2H95_14310) dnaD 2827861..2828559 (-) 699 WP_125121252.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23943.09 Da        Isoelectric Point: 9.6240

>NTDB_id=265710 C2H95_RS14355 WP_072175980.1 2823225..2823845(+) (recU) [Bacillus subtilis strain PK5_17]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=265710 C2H95_RS14355 WP_072175980.1 2823225..2823845(+) (recU) [Bacillus subtilis strain PK5_17]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCGCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment