Detailed information NTG0265650

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: C2H93_RS16940
• Genome accession: NZ_CP026036
• Coordinates: 3321552..3322697 (+)
• Length: 381 a.a.
• NCBI ID: WP_249852361.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain PK5_16
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3316552..3327697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2H93_RS16920 (C2H93_16915)	albF	3316568..3317848 (+)	1281	WP_249852358.1	pitrilysin family protein	-
C2H93_RS16925 (C2H93_16920)	albG	3317845..3318546 (+)	702	WP_249852359.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
C2H93_RS16930 (C2H93_16925)	ywhL	3318552..3319928 (-)	1377	WP_014481223.1	YncE family protein	-
C2H93_RS16935 (C2H93_16930)	ywhK	3319967..3321322 (-)	1356	WP_249852360.1	YncE family protein	-
C2H93_RS20795 (C2H93_16935)	-	3321319..3321549 (-)	231	WP_041334639.1	hypothetical protein	-
C2H93_RS16940 (C2H93_16940)	rapF	3321552..3322697 (+)	1146	WP_249852361.1	tetratricopeptide repeat protein	Regulator
C2H93_RS16945 (C2H93_16945)	-	3322681..3322800 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
C2H93_RS16950 (C2H93_16950)	ywhH	3322899..3323372 (+)	474	WP_249852362.1	YbaK/EbsC family protein	-
C2H93_RS16955 (C2H93_16955)	speB	3323404..3324276 (-)	873	WP_003227545.1	agmatinase	-
C2H93_RS16960 (C2H93_16960)	speE	3324337..3325167 (-)	831	WP_003227543.1	spermidine synthase	-
C2H93_RS16965 (C2H93_16965)	pbpG	3325369..3327444 (+)	2076	WP_015384942.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45621.29 Da
• Isoelectric Point: 5.0684

>NTDB_id=265650 C2H93_RS16940 WP_249852361.1 3321552..3322697(+) (rapF) [Bacillus subtilis strain PK5_16]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAVGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=265650 C2H93_RS16940 WP_249852361.1 3321552..3322697(+) (rapF) [Bacillus subtilis strain PK5_16]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAGTATTTGCGAAGAGAAATCAAACAAGAGCTGGATCAAATGGAAGAAGATCAGGATCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TCAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTCCCTTCACTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGTGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

• Tetratricopeptide repeat (TPR_8) (263-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57