Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C2H93_RS11985 Genome accession   NZ_CP026036
Coordinates   2333770..2334516 (-) Length   248 a.a.
NCBI ID   WP_249852216.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2328770..2339516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS11960 (C2H93_11940) mreC 2329176..2330048 (-) 873 WP_038829628.1 rod shape-determining protein MreC -
  C2H93_RS11965 (C2H93_11945) mreB 2330079..2331092 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C2H93_RS11970 (C2H93_11950) radC 2331184..2331879 (-) 696 WP_021480240.1 DNA repair protein RadC -
  C2H93_RS11975 (C2H93_11955) maf 2331916..2332485 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C2H93_RS11980 (C2H93_11960) spoIIB 2332638..2333636 (-) 999 WP_249852215.1 stage II sporulation protein SpoIIB -
  C2H93_RS11985 (C2H93_11965) comC 2333770..2334516 (-) 747 WP_249852216.1 A24 family peptidase Machinery gene
  C2H93_RS11990 (C2H93_11970) folC 2334657..2335949 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C2H93_RS11995 (C2H93_11975) valS 2336009..2338651 (-) 2643 WP_249852814.1 valine--tRNA ligase -
  C2H93_RS12000 (C2H93_11980) - 2339099..2339290 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26419.04 Da        Isoelectric Point: 9.7803

>NTDB_id=265633 C2H93_RS11985 WP_249852216.1 2333770..2334516(-) (comC) [Bacillus subtilis strain PK5_16]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLVAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=265633 C2H93_RS11985 WP_249852216.1 2333770..2334516(-) (comC) [Bacillus subtilis strain PK5_16]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGTAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98

Multiple sequence alignment