Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C2H93_RS10735 Genome accession   NZ_CP026036
Coordinates   2113108..2113875 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain PK5_16     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2108108..2118875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS10715 (C2H93_10740) ppsR 2108281..2109093 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  C2H93_RS10720 (C2H93_10745) ccpN 2109119..2109757 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  C2H93_RS10725 (C2H93_10750) glyS 2109891..2111930 (-) 2040 WP_021480050.1 glycine--tRNA ligase subunit beta -
  C2H93_RS10730 (C2H93_10755) glyQ 2111923..2112810 (-) 888 WP_249852187.1 glycine--tRNA ligase subunit alpha -
  C2H93_RS10735 (C2H93_10760) recO 2113108..2113875 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  C2H93_RS10740 (C2H93_10765) yqzL 2113912..2114055 (-) 144 WP_003230053.1 YqzL family protein -
  C2H93_RS10745 (C2H93_10770) era 2114203..2115108 (-) 906 WP_003230051.1 GTPase Era -
  C2H93_RS10750 (C2H93_10775) cdd 2115089..2115499 (-) 411 WP_003230049.1 cytidine deaminase -
  C2H93_RS10755 (C2H93_10780) unpK 2115618..2115989 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  C2H93_RS10760 (C2H93_10785) ybeY 2115970..2116443 (-) 474 WP_249852188.1 rRNA maturation RNase YbeY -
  C2H93_RS10765 (C2H93_10790) pgpH 2116444..2118579 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=265625 C2H93_RS10735 WP_014477369.1 2113108..2113875(-) (recO) [Bacillus subtilis strain PK5_16]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=265625 C2H93_RS10735 WP_014477369.1 2113108..2113875(-) (recO) [Bacillus subtilis strain PK5_16]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGTCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment