Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C2H93_RS10205 Genome accession   NZ_CP026036
Coordinates   2023224..2024027 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2018224..2029027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS10180 (C2H93_10195) glpQ 2019370..2020101 (-) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -
  C2H93_RS10185 (C2H93_10200) yqiI 2020180..2020800 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  C2H93_RS10190 (C2H93_10205) yqiH 2020815..2021108 (-) 294 WP_003230284.1 lipoprotein -
  C2H93_RS10195 - 2021416..2021568 (+) 153 WP_014480226.1 hypothetical protein -
  C2H93_RS10200 (C2H93_10210) yqiG 2021641..2022759 (+) 1119 WP_249852180.1 NADH-dependent flavin oxidoreductase -
  C2H93_RS10205 (C2H93_10215) spo0A 2023224..2024027 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  C2H93_RS10210 (C2H93_10225) spoIVB 2024303..2025583 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  C2H93_RS10215 (C2H93_10230) recN 2025758..2027488 (-) 1731 WP_077671427.1 DNA repair protein RecN Machinery gene
  C2H93_RS10220 (C2H93_10235) argR 2027525..2027974 (-) 450 WP_014114358.1 arginine repressor ArgR -
  C2H93_RS10225 (C2H93_10240) yqxC 2028072..2028917 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=265614 C2H93_RS10205 WP_003226427.1 2023224..2024027(-) (spo0A) [Bacillus subtilis strain PK5_16]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=265614 C2H93_RS10205 WP_003226427.1 2023224..2024027(-) (spo0A) [Bacillus subtilis strain PK5_16]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment