Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C2H93_RS09225 Genome accession   NZ_CP026036
Coordinates   1847130..1847750 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842130..1852750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS09185 (C2H93_09200) ypqE 1843261..1843767 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  C2H93_RS09190 (C2H93_09205) ypqA 1843905..1844324 (+) 420 WP_249852762.1 Hsp20/alpha crystallin family protein -
  C2H93_RS09195 (C2H93_09210) yppG 1844345..1844722 (-) 378 WP_014477159.1 YppG family protein -
  C2H93_RS09200 (C2H93_09215) yppF 1844910..1845098 (+) 189 WP_003230690.1 YppF family protein -
  C2H93_RS09205 (C2H93_09220) yppE 1845137..1845508 (-) 372 WP_021481525.1 YppE family protein -
  C2H93_RS09210 (C2H93_09225) yppD 1845554..1845799 (-) 246 WP_021481526.1 DUF5446 family protein -
  C2H93_RS09215 (C2H93_09230) sspM 1845998..1846102 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C2H93_RS09220 (C2H93_09235) yppC 1846127..1847089 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  C2H93_RS09225 (C2H93_09240) recU 1847130..1847750 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C2H93_RS09230 (C2H93_09245) ponA 1847772..1850528 (+) 2757 WP_021481528.1 PBP1A family penicillin-binding protein -
  C2H93_RS09235 (C2H93_09250) ypoC 1850603..1851097 (-) 495 WP_249852763.1 YpoC family protein -
  C2H93_RS09240 (C2H93_09255) nth 1851094..1851753 (-) 660 WP_009967580.1 endonuclease III -
  C2H93_RS09245 (C2H93_09260) dnaD 1851772..1852470 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=265613 C2H93_RS09225 WP_004399067.1 1847130..1847750(+) (recU) [Bacillus subtilis strain PK5_16]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=265613 C2H93_RS09225 WP_004399067.1 1847130..1847750(+) (recU) [Bacillus subtilis strain PK5_16]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment