Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C2H93_RS05840 Genome accession   NZ_CP026036
Coordinates   1124075..1124539 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain PK5_16     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1119075..1129539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS05820 (C2H93_05830) kinA 1119542..1121362 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  C2H93_RS05825 (C2H93_05835) dapX 1121372..1122553 (-) 1182 WP_101502064.1 aminotransferase A -
  C2H93_RS05830 (C2H93_05840) - 1122755..1122916 (-) 162 WP_014476654.1 hypothetical protein -
  C2H93_RS05835 (C2H93_05845) cheV 1123120..1124031 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  C2H93_RS05840 (C2H93_05850) kre 1124075..1124539 (-) 465 WP_003232406.1 YkyB family protein Regulator
  C2H93_RS05845 (C2H93_05855) ykuC 1124665..1125957 (-) 1293 WP_014479656.1 MFS transporter -
  C2H93_RS05850 (C2H93_05860) ltdD 1126033..1126527 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  C2H93_RS05855 (C2H93_05865) ppeE 1126584..1127444 (-) 861 WP_249852668.1 metallophosphoesterase -
  C2H93_RS05860 (C2H93_05870) fadH 1127587..1128351 (+) 765 WP_249852669.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=265606 C2H93_RS05840 WP_003232406.1 1124075..1124539(-) (kre) [Bacillus subtilis strain PK5_16]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=265606 C2H93_RS05840 WP_003232406.1 1124075..1124539(-) (kre) [Bacillus subtilis strain PK5_16]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTGACAAAAGCGAAACACCTTTTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTAC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment