Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C2H93_RS03910 Genome accession   NZ_CP026036
Coordinates   767765..768343 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain PK5_16     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 762765..773343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS03890 (C2H93_03900) hemAT 763276..764574 (-) 1299 WP_049140766.1 heme-based aerotactic transducer HemAT -
  C2H93_RS03895 (C2H93_03905) yhfW 764713..766242 (-) 1530 WP_049140685.1 FAD-dependent oxidoreductase -
  C2H93_RS03900 (C2H93_03910) yhxC 766354..767211 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  C2H93_RS03905 (C2H93_03915) yhzC 767239..767472 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  C2H93_RS03910 (C2H93_03920) comK 767765..768343 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  C2H93_RS03915 (C2H93_03925) yhxD 768390..769289 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  C2H93_RS03920 (C2H93_03930) yhjA 769506..769775 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  C2H93_RS03925 (C2H93_03935) yhjB 769819..771288 (-) 1470 WP_249852619.1 sodium:solute symporter -
  C2H93_RS03930 (C2H93_03940) yhjC 771285..771485 (-) 201 WP_064671202.1 DUF3311 domain-containing protein -
  C2H93_RS03935 (C2H93_03945) - 771684..772055 (-) 372 WP_064671203.1 hypothetical protein -
  C2H93_RS03940 (C2H93_03950) yhjE 772207..772830 (+) 624 WP_010886465.1 VTT domain-containing protein -
  C2H93_RS03945 (C2H93_03955) lepB 772832..773338 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=265594 C2H93_RS03910 WP_003245329.1 767765..768343(+) (comK) [Bacillus subtilis strain PK5_16]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=265594 C2H93_RS03910 WP_003245329.1 767765..768343(+) (comK) [Bacillus subtilis strain PK5_16]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment