Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VC0395_RS12580 Genome accession   NC_009457
Coordinates   1539058..1539672 (-) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae O395     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1534058..1544672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC0395_RS12555 ybgE 1534369..1534686 (-) 318 WP_001286617.1 cyd operon protein YbgE -
  VC0395_RS12560 cydX 1534679..1534786 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  VC0395_RS12565 (VC0395_A1434) cydB 1534799..1535935 (-) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  VC0395_RS12570 (VC0395_A1435) cydA 1535953..1537539 (-) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  VC0395_RS12575 (VC0395_A1436) ruvB 1537998..1539002 (-) 1005 WP_000568492.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VC0395_RS12580 (VC0395_A1437) ruvA 1539058..1539672 (-) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  VC0395_RS12585 (VC0395_A1438) ruvC 1539769..1540290 (-) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  VC0395_RS12590 (VC0395_A1439) cysS 1540378..1541757 (-) 1380 WP_000913180.1 cysteine--tRNA ligase -
  VC0395_RS12595 (VC0395_A1440) - 1541903..1542397 (+) 495 WP_000631302.1 peptidylprolyl isomerase -
  VC0395_RS12600 (VC0395_A1441) lpxH 1542438..1543178 (+) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  VC0395_RS12605 (VC0395_A1442) - 1543274..1544488 (+) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=26559 VC0395_RS12580 WP_000580359.1 1539058..1539672(-) (ruvA) [Vibrio cholerae O395]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=26559 VC0395_RS12580 WP_000580359.1 1539058..1539672(-) (ruvA) [Vibrio cholerae O395]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment