Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C2H93_RS00220 Genome accession   NZ_CP026036
Coordinates   43152..43601 (-) Length   149 a.a.
NCBI ID   WP_070548532.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 38152..48601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS00180 - 38476..38672 (+) 197 Protein_35 hypothetical protein -
  C2H93_RS00185 (C2H93_00180) yckC 38691..39146 (+) 456 WP_249852504.1 RDD family protein -
  C2H93_RS00190 (C2H93_00185) yckD 39227..39559 (+) 333 WP_021481829.1 YckD family protein -
  C2H93_RS00195 (C2H93_00190) - 39686..40108 (+) 423 WP_170939093.1 MarR family transcriptional regulator -
  C2H93_RS00200 (C2H93_00195) - 40096..40437 (+) 342 WP_032724911.1 DUF3147 family protein -
  C2H93_RS00205 (C2H93_00200) - 40456..41184 (+) 729 WP_021481826.1 AAA family ATPase -
  C2H93_RS00210 (C2H93_00205) bglC 41257..42690 (+) 1434 WP_123373936.1 6-phospho-beta-glucosidase -
  C2H93_RS00215 (C2H93_00210) nin/comJ 42727..43125 (-) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  C2H93_RS00220 (C2H93_00215) nucA/comI 43152..43601 (-) 450 WP_070548532.1 DNA-entry nuclease Machinery gene
  C2H93_RS00225 (C2H93_00220) tlpC 43769..45490 (-) 1722 WP_103803501.1 methyl-accepting chemotaxis protein TlpC -
  C2H93_RS00230 (C2H93_00225) hxlB 45601..46158 (-) 558 WP_021481820.1 6-phospho-3-hexuloisomerase -
  C2H93_RS00235 (C2H93_00230) hxlA 46164..46796 (-) 633 WP_021481819.1 3-hexulose-6-phosphate synthase -
  C2H93_RS00240 (C2H93_00235) hxlR 47028..47390 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.35 Da        Isoelectric Point: 4.4397

>NTDB_id=265583 C2H93_RS00220 WP_070548532.1 43152..43601(-) (nucA/comI) [Bacillus subtilis strain PK5_16]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLQDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=265583 C2H93_RS00220 WP_070548532.1 43152..43601(-) (nucA/comI) [Bacillus subtilis strain PK5_16]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTACAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment