Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C2H96_RS21355 Genome accession   NZ_CP026035
Coordinates   4130605..4131225 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4125605..4136225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS21335 (C2H96_21280) dnaD 4125887..4126585 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  C2H96_RS21340 (C2H96_21285) nth 4126604..4127263 (+) 660 WP_009967580.1 endonuclease III -
  C2H96_RS21345 (C2H96_21290) ypoC 4127260..4127754 (+) 495 WP_120028311.1 YpoC family protein -
  C2H96_RS21350 (C2H96_21295) ponA 4127830..4130583 (-) 2754 WP_120028310.1 PBP1A family penicillin-binding protein -
  C2H96_RS21355 (C2H96_21300) recU 4130605..4131225 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C2H96_RS21360 (C2H96_21305) yppC 4131266..4132228 (+) 963 WP_021481527.1 DUF2515 domain-containing protein -
  C2H96_RS21365 (C2H96_21310) sspM 4132253..4132357 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C2H96_RS21370 (C2H96_21315) yppD 4132556..4132801 (+) 246 WP_021481526.1 DUF5446 family protein -
  C2H96_RS21375 (C2H96_21320) yppE 4132847..4133218 (+) 372 WP_021481525.1 YppE family protein -
  C2H96_RS21380 (C2H96_21325) yppF 4133257..4133445 (-) 189 WP_003230690.1 YppF family protein -
  C2H96_RS21385 (C2H96_21330) yppG 4133633..4134010 (+) 378 WP_004398696.1 YppG family protein -
  C2H96_RS21390 (C2H96_21335) ypqA 4134031..4134450 (-) 420 WP_120028308.1 Hsp20/alpha crystallin family protein -
  C2H96_RS21395 (C2H96_21340) ypqE 4134588..4135094 (+) 507 WP_120028600.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=265581 C2H96_RS21355 WP_004399067.1 4130605..4131225(-) (recU) [Bacillus subtilis strain PK5_68]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=265581 C2H96_RS21355 WP_004399067.1 4130605..4131225(-) (recU) [Bacillus subtilis strain PK5_68]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment