Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   C2H96_RS20130 Genome accession   NZ_CP026035
Coordinates   3915147..3915443 (+) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain PK5_68     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3910147..3920443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS20110 (C2H96_20050) yqhB 3910204..3911532 (-) 1329 WP_032726166.1 hemolysin family protein -
  C2H96_RS20115 (C2H96_20055) corA 3911675..3912628 (+) 954 WP_015483432.1 magnesium transporter CorA -
  C2H96_RS21525 (C2H96_20060) - 3912694..3912828 (+) 135 WP_257786427.1 hypothetical protein -
  C2H96_RS20120 (C2H96_20065) comGA 3913039..3914109 (+) 1071 WP_070547533.1 competence protein ComGA Machinery gene
  C2H96_RS20125 (C2H96_20070) comGB 3914096..3915133 (+) 1038 WP_070547532.1 comG operon protein ComGB Machinery gene
  C2H96_RS20130 (C2H96_20075) comGC 3915147..3915443 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  C2H96_RS20135 (C2H96_20080) comGD 3915433..3915864 (+) 432 WP_120028362.1 comG operon protein ComGD Machinery gene
  C2H96_RS20140 (C2H96_20085) comGE 3915848..3916195 (+) 348 WP_070547530.1 ComG operon protein 5 Machinery gene
  C2H96_RS20145 (C2H96_20090) comGF 3916221..3916604 (+) 384 WP_070547529.1 ComG operon protein ComGF Machinery gene
  C2H96_RS20150 (C2H96_20095) comGG 3916605..3916979 (+) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  C2H96_RS20155 (C2H96_20100) spoIIT 3917051..3917230 (+) 180 WP_003230176.1 YqzE family protein -
  C2H96_RS20160 (C2H96_20105) yqzG 3917272..3917598 (-) 327 WP_038829733.1 YqzG/YhdC family protein -
  C2H96_RS20165 (C2H96_20110) tapA 3917869..3918630 (+) 762 WP_120028361.1 amyloid fiber anchoring/assembly protein TapA -
  C2H96_RS20170 (C2H96_20115) sipW 3918614..3919186 (+) 573 WP_003246088.1 signal peptidase I SipW -
  C2H96_RS20175 (C2H96_20120) tasA 3919251..3920036 (+) 786 WP_014477324.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=265572 C2H96_RS20130 WP_003230162.1 3915147..3915443(+) (comGC) [Bacillus subtilis strain PK5_68]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=265572 C2H96_RS20130 WP_003230162.1 3915147..3915443(+) (comGC) [Bacillus subtilis strain PK5_68]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTTACGAAGCATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGGAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment