Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DK878_RS07780 Genome accession   NZ_CP031379
Coordinates   1572349..1573032 (-) Length   227 a.a.
NCBI ID   WP_002936735.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2660     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567349..1578032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK878_RS07755 (DK878_08000) - 1567825..1568142 (-) 318 WP_002936711.1 PadR family transcriptional regulator -
  DK878_RS07760 (DK878_08005) - 1568139..1568303 (-) 165 WP_002936715.1 hypothetical protein -
  DK878_RS07765 (DK878_08010) - 1568494..1570506 (-) 2013 WP_002936720.1 ABC transporter permease -
  DK878_RS07770 (DK878_08015) - 1570508..1571266 (-) 759 WP_022540669.1 ABC transporter ATP-binding protein -
  DK878_RS07775 (DK878_08020) - 1571364..1572356 (-) 993 WP_002936726.1 HAMP domain-containing sensor histidine kinase -
  DK878_RS07780 (DK878_08025) braR 1572349..1573032 (-) 684 WP_002936735.1 response regulator transcription factor Regulator
  DK878_RS07785 (DK878_08030) - 1573202..1574371 (+) 1170 WP_002936737.1 DUF2974 domain-containing protein -
  DK878_RS07790 (DK878_08035) - 1574386..1575510 (-) 1125 WP_024409359.1 aminotransferase -
  DK878_RS07795 (DK878_08040) - 1575658..1576419 (-) 762 WP_009910541.1 nuclear transport factor 2 family protein -
  DK878_RS07800 (DK878_08045) - 1576429..1577940 (-) 1512 WP_009910542.1 ABC transporter permease/substrate-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26523.77 Da        Isoelectric Point: 4.6132

>NTDB_id=265569 DK878_RS07780 WP_002936735.1 1572349..1573032(-) (braR) [Streptococcus suis strain ISU2660]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=265569 DK878_RS07780 WP_002936735.1 1572349..1573032(-) (braR) [Streptococcus suis strain ISU2660]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCGTTTTTCAATGGTTATTACTGGTGTCAGGAAATTCGCAAGACCTCCCGTGTGCCCATTATGTTTCTTTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCTAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACCCTGTCGGTTAACATCGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383

Multiple sequence alignment