Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C2H96_RS18290 Genome accession   NZ_CP026035
Coordinates   3598357..3599103 (+) Length   248 a.a.
NCBI ID   WP_021480242.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3593357..3604103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS18275 (C2H96_18240) - 3593583..3593774 (-) 192 WP_003222590.1 hypothetical protein -
  C2H96_RS18280 (C2H96_18245) valS 3594222..3596864 (+) 2643 WP_120028443.1 valine--tRNA ligase -
  C2H96_RS18285 (C2H96_18250) folC 3596924..3598216 (+) 1293 WP_120028442.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C2H96_RS18290 (C2H96_18255) comC 3598357..3599103 (+) 747 WP_021480242.1 A24 family peptidase Machinery gene
  C2H96_RS18295 (C2H96_18260) spoIIB 3599237..3600235 (+) 999 WP_070547606.1 stage II sporulation protein SpoIIB -
  C2H96_RS18300 (C2H96_18265) maf 3600389..3600958 (+) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  C2H96_RS18305 (C2H96_18270) radC 3600995..3601690 (+) 696 WP_003246034.1 DNA repair protein RadC -
  C2H96_RS18310 (C2H96_18275) mreB 3601782..3602795 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C2H96_RS18315 (C2H96_18280) mreC 3602826..3603698 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26390.98 Da        Isoelectric Point: 9.7803

>NTDB_id=265561 C2H96_RS18290 WP_021480242.1 3598357..3599103(+) (comC) [Bacillus subtilis strain PK5_68]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=265561 C2H96_RS18290 WP_021480242.1 3598357..3599103(+) (comC) [Bacillus subtilis strain PK5_68]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984

Multiple sequence alignment