Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C2H96_RS09410 Genome accession   NZ_CP026035
Coordinates   1876220..1876669 (+) Length   149 a.a.
NCBI ID   WP_038828489.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1871220..1881669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS09390 (C2H96_09305) hxlR 1872433..1872795 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  C2H96_RS09395 (C2H96_09310) hxlA 1873026..1873658 (+) 633 WP_032724921.1 3-hexulose-6-phosphate synthase -
  C2H96_RS09400 (C2H96_09315) hxlB 1873664..1874221 (+) 558 WP_021481820.1 6-phospho-3-hexuloisomerase -
  C2H96_RS09405 (C2H96_09320) tlpC 1874331..1876052 (+) 1722 WP_120027764.1 methyl-accepting chemotaxis protein TlpC -
  C2H96_RS09410 (C2H96_09325) nucA/comI 1876220..1876669 (+) 450 WP_038828489.1 DNA-entry nuclease Machinery gene
  C2H96_RS09415 (C2H96_09330) nin/comJ 1876696..1877094 (+) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  C2H96_RS09420 (C2H96_09335) bglC 1877131..1878564 (-) 1434 WP_120027763.1 6-phospho-beta-glucosidase -
  C2H96_RS09425 (C2H96_09340) - 1878636..1879364 (-) 729 WP_021481826.1 AAA family ATPase -
  C2H96_RS09430 (C2H96_09345) - 1879383..1879724 (-) 342 WP_032724911.1 DUF3147 family protein -
  C2H96_RS09435 (C2H96_09350) - 1879712..1880134 (-) 423 WP_170939093.1 MarR family transcriptional regulator -
  C2H96_RS09440 (C2H96_09355) yckD 1880262..1880594 (-) 333 WP_120027762.1 YckD family protein -
  C2H96_RS09445 (C2H96_09360) yckC 1880677..1881132 (-) 456 WP_014475763.1 RDD family protein -
  C2H96_RS09450 - 1881152..1881341 (-) 190 Protein_1857 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.46 Da        Isoelectric Point: 4.5282

>NTDB_id=265533 C2H96_RS09410 WP_038828489.1 1876220..1876669(+) (nucA/comI) [Bacillus subtilis strain PK5_68]
MNITTDIIKTILLVIVIIAAAAVGLIKVDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVTSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=265533 C2H96_RS09410 WP_038828489.1 1876220..1876669(+) (nucA/comI) [Bacillus subtilis strain PK5_68]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGTCGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTAACTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973

Multiple sequence alignment