Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C2H96_RS05520 Genome accession   NZ_CP026035
Coordinates   1115683..1116261 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110683..1121261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS05485 (C2H96_05400) lepB 1110688..1111194 (-) 507 WP_003233128.1 signal peptidase I -
  C2H96_RS05490 (C2H96_05405) yhjE 1111196..1111819 (-) 624 WP_010886465.1 VTT domain-containing protein -
  C2H96_RS05495 (C2H96_05410) - 1111971..1112342 (+) 372 WP_064671203.1 hypothetical protein -
  C2H96_RS05500 (C2H96_05415) yhjC 1112541..1112741 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C2H96_RS05505 (C2H96_05420) yhjB 1112738..1114207 (+) 1470 WP_120027952.1 sodium:solute symporter -
  C2H96_RS05510 (C2H96_05425) yhjA 1114251..1114520 (-) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  C2H96_RS05515 (C2H96_05430) yhxD 1114737..1115636 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  C2H96_RS05520 (C2H96_05435) comK 1115683..1116261 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  C2H96_RS05525 (C2H96_05440) yhzC 1116553..1116786 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  C2H96_RS05530 (C2H96_05445) yhxC 1116814..1117671 (-) 858 WP_021479616.1 SDR family oxidoreductase -
  C2H96_RS05535 (C2H96_05450) yhfW 1117783..1119312 (+) 1530 WP_120027951.1 FAD-dependent oxidoreductase -
  C2H96_RS05540 (C2H96_05455) hemAT 1119451..1120749 (+) 1299 WP_041338163.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=265522 C2H96_RS05520 WP_029317573.1 1115683..1116261(-) (comK) [Bacillus subtilis strain PK5_68]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=265522 C2H96_RS05520 WP_029317573.1 1115683..1116261(-) (comK) [Bacillus subtilis strain PK5_68]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment