Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C2H96_RS03570 Genome accession   NZ_CP026035
Coordinates   755526..755990 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain PK5_68     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 750526..760990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS03550 (C2H96_03485) fadH 751714..752478 (-) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -
  C2H96_RS03555 (C2H96_03490) ppeE 752621..753481 (+) 861 WP_003232400.1 metallophosphoesterase -
  C2H96_RS03560 (C2H96_03495) ltdD 753538..754032 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  C2H96_RS03565 (C2H96_03500) ykuC 754108..755400 (+) 1293 WP_014479656.1 MFS transporter -
  C2H96_RS03570 (C2H96_03505) kre 755526..755990 (+) 465 WP_003232406.1 YkyB family protein Regulator
  C2H96_RS03575 (C2H96_03510) cheV 756034..756945 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  C2H96_RS03580 (C2H96_03515) - 757149..757310 (+) 162 WP_014476654.1 hypothetical protein -
  C2H96_RS03585 (C2H96_03520) dapX 757511..758692 (+) 1182 WP_120028042.1 aminotransferase A -
  C2H96_RS03590 (C2H96_03525) kinA 758702..760522 (-) 1821 WP_015252197.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=265510 C2H96_RS03570 WP_003232406.1 755526..755990(+) (kre) [Bacillus subtilis strain PK5_68]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=265510 C2H96_RS03570 WP_003232406.1 755526..755990(+) (kre) [Bacillus subtilis strain PK5_68]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment