Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C2H94_RS15965 Genome accession   NZ_CP026034
Coordinates   3040290..3040868 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3035290..3045868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS15945 (C2H94_15885) hemAT 3035802..3037100 (-) 1299 WP_064671445.1 heme-based aerotactic transducer HemAT -
  C2H94_RS15950 (C2H94_15890) yhfW 3037238..3038767 (-) 1530 WP_064671201.1 FAD-dependent oxidoreductase -
  C2H94_RS15955 (C2H94_15895) yhxC 3038879..3039736 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  C2H94_RS15960 (C2H94_15900) yhzC 3039764..3039997 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  C2H94_RS15965 (C2H94_15905) comK 3040290..3040868 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  C2H94_RS15970 (C2H94_15910) yhxD 3040915..3041814 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  C2H94_RS15975 (C2H94_15915) yhjA 3042031..3042300 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  C2H94_RS15980 (C2H94_15920) yhjB 3042344..3043811 (-) 1468 Protein_3078 sodium:solute symporter -
  C2H94_RS15985 (C2H94_15925) yhjC 3043808..3044008 (-) 201 WP_064671202.1 DUF3311 domain-containing protein -
  C2H94_RS15990 (C2H94_15930) - 3044207..3044578 (-) 372 WP_064671203.1 hypothetical protein -
  C2H94_RS15995 (C2H94_15935) yhjE 3044730..3045353 (+) 624 WP_010886465.1 VTT domain-containing protein -
  C2H94_RS16000 (C2H94_15940) lepB 3045355..3045861 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=265484 C2H94_RS15965 WP_029317573.1 3040290..3040868(+) (comK) [Bacillus subtilis strain PK5_52]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=265484 C2H94_RS15965 WP_029317573.1 3040290..3040868(+) (comK) [Bacillus subtilis strain PK5_52]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment