Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C2H94_RS10350 Genome accession   NZ_CP026034
Coordinates   1954595..1955707 (+) Length   370 a.a.
NCBI ID   WP_249849582.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1949595..1960707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS10325 (C2H94_10275) rnpA 1950309..1950659 (-) 351 WP_003242628.1 ribonuclease P protein component -
  C2H94_RS10330 (C2H94_10280) rpmH 1950811..1950945 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  C2H94_RS10335 (C2H94_10285) dnaA 1951572..1952912 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  C2H94_RS10340 (C2H94_10290) dnaN 1953098..1954234 (+) 1137 WP_003242509.1 DNA polymerase III subunit beta -
  C2H94_RS10345 (C2H94_10295) rlbA 1954364..1954579 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  C2H94_RS10350 (C2H94_10300) recF 1954595..1955707 (+) 1113 WP_249849582.1 DNA replication/repair protein RecF Machinery gene
  C2H94_RS10355 (C2H94_10305) remB 1955725..1955970 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  C2H94_RS10360 (C2H94_10310) gyrB 1956025..1957941 (+) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  C2H94_RS10365 (C2H94_10315) gyrA 1958152..1960617 (+) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42327.38 Da        Isoelectric Point: 7.3979

>NTDB_id=265466 C2H94_RS10350 WP_249849582.1 1954595..1955707(+) (recF) [Bacillus subtilis strain PK5_52]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLELSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRHAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=265466 C2H94_RS10350 WP_249849582.1 1954595..1955707(+) (recF) [Bacillus subtilis strain PK5_52]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCA
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTATCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCTATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCTCTAGAGTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCATGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.459

100

0.995

Multiple sequence alignment