Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C2H94_RS03405 Genome accession   NZ_CP026034
Coordinates   578243..578989 (-) Length   248 a.a.
NCBI ID   WP_072175591.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 573243..583989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS03380 (C2H94_03330) mreC 573649..574521 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  C2H94_RS03385 (C2H94_03335) mreB 574552..575565 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C2H94_RS03390 (C2H94_03340) radC 575657..576352 (-) 696 WP_021480240.1 DNA repair protein RadC -
  C2H94_RS03395 (C2H94_03345) maf 576389..576958 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C2H94_RS03400 (C2H94_03350) spoIIB 577111..578109 (-) 999 WP_021480241.1 stage II sporulation protein SpoIIB -
  C2H94_RS03405 (C2H94_03355) comC 578243..578989 (-) 747 WP_072175591.1 A24 family peptidase Machinery gene
  C2H94_RS03410 (C2H94_03360) folC 579129..580421 (-) 1293 WP_072175590.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C2H94_RS03415 (C2H94_03365) valS 580481..583123 (-) 2643 WP_072175589.1 valine--tRNA ligase -
  C2H94_RS03420 (C2H94_03370) - 583571..583762 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26425.00 Da        Isoelectric Point: 9.7803

>NTDB_id=265445 C2H94_RS03405 WP_072175591.1 578243..578989(-) (comC) [Bacillus subtilis strain PK5_52]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=265445 C2H94_RS03405 WP_072175591.1 578243..578989(-) (comC) [Bacillus subtilis strain PK5_52]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.79

100

0.988

Multiple sequence alignment